{"id":"W4403350313","doi":"10.1101/2024.10.08.617287","title":"DigestR an open-source software tool for visualizing LC-MS proteomics data resulting from natural protein catabolism","year":2024,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"","keywords":"Catabolism; Open source software; Proteomics; Computer science; Open source; Software; Natural (archaeology); Computational biology; Chemistry; Data science; Biochemistry; Biology; Enzyme; Operating system","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003530127,0.00407765,0.002078243,0.004728952,0.0008001876,0.002381316,0.003772069,0.002100572,0.05752935],"category_scores_gemma":[0.005451635,0.002000155,0.002127337,0.001618058,0.0007137014,0.003011931,0.003691266,0.002764974,0.0238931],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009850182,"about_ca_system_score_gemma":0.001561324,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001796847,"about_ca_topic_score_gemma":0.002022984,"domain_scores_codex":[0.9989279,0.0001405649,0.0001681709,0.0002461707,0.00040121,0.0001160097],"domain_scores_gemma":[0.9967284,0.001743615,0.0003672002,0.0003944713,0.0004929221,0.0002733317],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.005247242,0.0007334136,0.008354085,0.007144792,0.001507385,0.003841929,0.001397556,0.008178279,0.1581187,0.007973507,0.5116822,0.2858209],"study_design_scores_gemma":[0.003623981,0.0007672809,0.02180283,0.001491241,0.0005106067,0.003946211,0.0003499413,0.2224212,0.2548013,0.02305293,0.4659028,0.001329748],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.005023898,0.0004982161,0.1985434,0.0001733877,0.000175978,0.0004198054,0.03022861,0.7622257,0.002711022],"genre_scores_gemma":[0.0711052,0.001666699,0.5412481,0.001622073,0.0002423343,0.00388991,0.130091,0.2342298,0.01590485],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.05752935,"threshold_uncertainty_score":0.1924548,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02956601076362925,"score_gpt":0.2996672273606407,"score_spread":0.2701012165970115,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}