{"id":"W4403361029","doi":"10.1101/2024.10.10.617683","title":"<i>Vibrio</i> are a potential source of novel colistin-resistance genes in European coastal environments","year":2024,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Région Occitanie Pyrénées-Méditerranée; Université de Montréal; European Commission; Université de Perpignan Via Domitia; Agence Nationale de la Recherche; Joint Programming Initiative Water challenges for a changing world; Joint Programming Initiative on Antimicrobial Resistance","keywords":"Colistin; Microbiology; Vibrio; Resistance (ecology); Gene; Biology; Antibiotic resistance; Bacteria; Genetics; Ecology; Antibiotics","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003670623,0.0004213907,0.0003821957,0.0009731645,0.0002781909,0.0009035501,0.0002587511,0.0003889292,0.0007265097],"category_scores_gemma":[0.000512788,0.0001481889,0.0004907027,0.00119952,0.0002688689,0.0002075164,0.0005301726,0.0002551682,0.0003071117],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002611564,"about_ca_system_score_gemma":0.0003391195,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004249673,"about_ca_topic_score_gemma":0.003918088,"domain_scores_codex":[0.9997054,0.00002996071,0.00002967713,0.0001318135,0.00004981055,0.00005333856],"domain_scores_gemma":[0.9995348,0.00006311614,0.0002292929,0.0000388644,0.00008016564,0.00005380291],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0006577115,0.00008142876,0.1969155,0.0004735236,0.0002773669,0.001116634,0.0006076048,0.001232499,0.7631011,0.0003377228,0.0006610777,0.03453787],"study_design_scores_gemma":[0.0000204815,0.0002116728,0.9523987,0.0001301996,0.0001806713,0.001639393,0.0008416157,0.001096337,0.03317131,0.0002167487,0.01005201,0.00004089439],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9945617,0.001180127,0.001244405,0.00006003213,0.00001039712,0.000009340649,0.001858232,0.00005332518,0.001022315],"genre_scores_gemma":[0.9905685,0.0006462157,0.002325977,0.00007862929,0.00001106176,0.00001281854,0.00576196,0.0000274132,0.0005674082],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004249673,"threshold_uncertainty_score":0.008449852,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008983134003623945,"score_gpt":0.2042388446244129,"score_spread":0.195255710620789,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}