{"id":"W4403381170","doi":"10.1128/mra.00986-24","title":"Complete genome sequence of marine prosthecate bacterium <i>Fretibacter rubidus</i> type strain JCM 15585","year":2024,"lang":"en","type":"article","venue":"Microbiology Resource Announcements","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Université de Montréal","keywords":"Biology; Alphaproteobacteria; Whole genome sequencing; Genome; Strain (injury); Type (biology); Genetics; Gene; Evolutionary biology; 16S ribosomal RNA; Ecology; Anatomy","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002147031,0.0002579637,0.0002721466,0.00006368236,0.00007603981,0.00002849229,0.0003304766,0.0001644124,0.0001054269],"category_scores_gemma":[0.00001329666,0.0002308825,0.0001027542,0.0001344174,0.0002886852,0.000001587176,0.0004370766,0.0001250904,0.00006590131],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002295719,"about_ca_system_score_gemma":0.00007628778,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001652115,"about_ca_topic_score_gemma":0.0000116756,"domain_scores_codex":[0.9985844,0.00007702506,0.0003501322,0.0005335759,0.0000555784,0.0003992748],"domain_scores_gemma":[0.99933,0.0000124134,0.00009421678,0.0004006429,0.0001079007,0.00005481215],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001049683,0.00003897102,0.002908096,0.00006569317,0.0002671574,0.000008046188,0.0001366571,0.00001521691,0.9939036,0.00002528778,0.001970831,0.0005554838],"study_design_scores_gemma":[0.0003095986,0.0005194636,0.001176166,0.00002507079,0.00003720872,0.00005712202,0.00004878412,0.000007138928,0.0183778,0.00004060454,0.979149,0.0002520656],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9861478,0.00237149,0.00004574957,0.0003000693,0.0004463858,0.0003574287,0.008406166,0.00001434935,0.001910551],"genre_scores_gemma":[0.9739169,0.0006209817,0.0005582232,0.0009253101,0.000339721,0.00003208737,0.0175123,0.00006327367,0.006031162],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9771782,"threshold_uncertainty_score":0.9415114,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02015882814436636,"score_gpt":0.24161261580609,"score_spread":0.2214537876617236,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}