{"id":"W4403437483","doi":"10.1101/2024.10.14.618271","title":"Farm exposure is associated with human breast milk immune profile and microbiome","year":2024,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Infant Nutrition and Health","field":"Nursing","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University; Discovery Centre","funders":"","keywords":"Microbiome; Immune system; Breast milk; Human breast milk; Biology; Immunology; Food science; Genetics; Biochemistry","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001307082,0.000114555,0.0001176523,0.0002202031,0.0002010369,0.0003128248,0.00006460397,0.0001787029,0.001258234],"category_scores_gemma":[0.0003682579,0.0001031495,0.0001159587,0.0002858862,0.0001129596,0.0001273392,0.0002224013,0.0001478114,0.0001085413],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001674982,"about_ca_system_score_gemma":0.0001491003,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004660194,"about_ca_topic_score_gemma":0.008626889,"domain_scores_codex":[0.9998817,0.00002632126,0.000006535404,0.00003905475,0.00002131211,0.00002499783],"domain_scores_gemma":[0.9998506,0.00001990139,0.00007803377,0.00001144228,0.00001655477,0.00002333717],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002382025,0.0000415155,0.9577857,0.00002086002,0.00004692189,0.00008057705,0.0001583223,0.0000374256,0.03562898,0.0000217227,0.0001248704,0.00581482],"study_design_scores_gemma":[5.776998e-7,0.00003909439,0.9990951,0.000002101021,0.000008136551,0.00005495675,0.00009948554,0.00003382879,0.0005459523,0.00001088151,0.0001092592,7.252906e-7],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9994868,0.0001074593,0.00006561473,0.00001764626,0.000001038834,0.000001158931,0.0001553836,0.000001766487,0.0001629388],"genre_scores_gemma":[0.9991255,0.0001336603,0.0001743345,0.00002234727,0.000002062168,0.00000392324,0.0001779168,0.000001557732,0.0003587909],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004660194,"threshold_uncertainty_score":0.009266138,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01088385709355281,"score_gpt":0.2318930677278967,"score_spread":0.2210092106343439,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}