{"id":"W4403451850","doi":"10.1101/2024.10.15.617758","title":"Genomic characterization of a unique population of <i>Leishmania tropica</i> in a new emerging focus of cutaneous leishmaniasis in Somali region of Ethiopia","year":2024,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Research on Leishmaniasis Studies","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"","keywords":"Leishmania tropica; Cutaneous leishmaniasis; Somali; Biology; Genome; Leishmania; Outbreak; Population; Leishmania major; Evolutionary biology; Leishmaniasis; Genetics; Virology; Gene; Medicine; Environmental health; Parasite hosting","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001356272,0.0002105301,0.0002058172,0.0006210523,0.0003111562,0.0006560629,0.0001379386,0.0002853609,0.0007488517],"category_scores_gemma":[0.0002781633,0.0001139386,0.0002338957,0.0005388752,0.0002478137,0.00009845158,0.0002239064,0.0002904049,0.000191918],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001579547,"about_ca_system_score_gemma":0.000142348,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002180039,"about_ca_topic_score_gemma":0.002780212,"domain_scores_codex":[0.9999102,0.00001002267,0.000005183388,0.00004353474,0.00001100191,0.00002011912],"domain_scores_gemma":[0.9997367,0.00004815525,0.00009190745,0.00002553397,0.00004525209,0.00005235506],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0006043573,0.00006200273,0.2680869,0.0001176381,0.0001274489,0.00143829,0.001945483,0.000300391,0.7176439,0.0001855751,0.0003195233,0.009168498],"study_design_scores_gemma":[0.00001980923,0.000221755,0.9792865,0.00003481432,0.00008353257,0.002699123,0.001612604,0.0002683594,0.01309088,0.00006852917,0.002603143,0.00001095288],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9980933,0.0001176824,0.0004197655,0.00002850586,0.000003776285,0.000009242599,0.00103337,0.000005676091,0.0002886043],"genre_scores_gemma":[0.9978115,0.00009506946,0.0005997834,0.00005832678,0.000007874153,0.000006550677,0.001222686,0.000005072583,0.0001931436],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002180039,"threshold_uncertainty_score":0.004334688,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01927488989083508,"score_gpt":0.2572257354185778,"score_spread":0.2379508455277428,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}