{"id":"W4403544456","doi":"10.1186/s40168-024-01940-8","title":"Upper respiratory microbial communities of healthy populations are shaped by niche and age","year":2024,"lang":"en","type":"article","venue":"Microbiome","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"ca_institutions":"Population Health Research Institute; McMaster University","funders":"National Center for Advancing Translational Sciences; National Institute of Allergy and Infectious Diseases; National Institutes of Health; Jarislowsky Foundation; University of Minnesota; Oklahoma State University","keywords":"Biology; Medical microbiology; Microbial ecology; Niche; Respiratory system; Ecology; Zoology; Microbiology; Bacteria; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001512035,0.0001520222,0.0001881603,0.0001036383,0.0001273295,0.00004140101,0.0001404464,0.0002051108,0.00003557185],"category_scores_gemma":[0.000005927548,0.0001512183,0.00007155327,0.0001194502,0.0001874044,0.000005068752,0.0001172979,0.000177249,0.00001213708],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002143724,"about_ca_system_score_gemma":0.00008180123,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00016001,"about_ca_topic_score_gemma":0.0002717238,"domain_scores_codex":[0.9991195,0.00009337133,0.000272294,0.0002267628,0.00003766389,0.0002504105],"domain_scores_gemma":[0.9995451,0.00001219088,0.00006421957,0.0002780918,0.00004163652,0.0000587449],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00002235809,0.00003262864,0.001734712,0.0002054429,0.00002448534,0.000003521996,0.0002108244,2.070616e-7,0.9035942,0.00003941275,0.09398345,0.000148784],"study_design_scores_gemma":[0.0006273124,0.0003603058,0.01080019,0.0001504666,0.00003641095,0.00007083198,0.0003872198,0.000007850696,0.124049,0.0000378061,0.8631195,0.0003530813],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9882506,0.007861201,0.00008482691,0.002832061,0.0001745794,0.0001735402,0.0005289403,0.00002588141,0.00006842482],"genre_scores_gemma":[0.9901064,0.0001925675,0.0004169477,0.007867766,0.0001168734,0.000006716781,0.0006652442,0.00003330475,0.000594168],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7795452,"threshold_uncertainty_score":0.6166503,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03131759480993033,"score_gpt":0.3022707018505779,"score_spread":0.2709531070406476,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}