{"id":"W4403597865","doi":"10.1093/bioinformatics/btae622","title":"Biologically-informed killer cell immunoglobulin-like receptor gene annotation tool","year":2024,"lang":"en","type":"article","venue":"Bioinformatics","topic":"Immune Cell Function and Interaction","field":"Immunology and Microbiology","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Victoria","funders":"National Cancer Institute; National Institutes of Health","keywords":"Genotyping; Annotation; Computational biology; Computer science; Gene; Identification (biology); Biology; Genetics; Genotype","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002563429,0.001849094,0.0009335953,0.001775925,0.001087014,0.002154736,0.002901131,0.001420803,0.02473396],"category_scores_gemma":[0.005926488,0.0007722986,0.001589195,0.001463914,0.0004188492,0.001491289,0.002479758,0.002053706,0.01845559],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006734254,"about_ca_system_score_gemma":0.001525861,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001871365,"about_ca_topic_score_gemma":0.002643537,"domain_scores_codex":[0.9989286,0.0002004459,0.0001173864,0.0003816309,0.0002798109,0.00009207028],"domain_scores_gemma":[0.9982998,0.0008069056,0.0002075957,0.0002662358,0.0002853415,0.0001341981],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.003694394,0.0003768718,0.01196282,0.006258953,0.0009864098,0.001952506,0.001667376,0.02098045,0.1089175,0.01518698,0.5791063,0.2489096],"study_design_scores_gemma":[0.001010055,0.0006113457,0.009702441,0.0007942306,0.0005213859,0.002727348,0.000545267,0.2033623,0.1327876,0.03423854,0.6130685,0.0006311918],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.01464983,0.0008445481,0.4437667,0.0005115711,0.0004749414,0.0003275649,0.07226016,0.4592734,0.007891308],"genre_scores_gemma":[0.07199977,0.0005636489,0.6302738,0.0009036069,0.0001068918,0.001007085,0.2447722,0.04343097,0.006942008],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.02473396,"threshold_uncertainty_score":0.08274335,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0134903828001199,"score_gpt":0.2365378545879528,"score_spread":0.2230474717878329,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}