{"id":"W4403600184","doi":"10.1099/mgen.0.001308","title":"AMRColab – a user-friendly antimicrobial resistance detection and visualization tool","year":2024,"lang":"en","type":"article","venue":"Microbial Genomics","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University","funders":"Ministry of Higher Education, Malaysia","keywords":"Visualization; User interface; Public health; Modular design; Interface (matter); Data science; Computer science; World Wide Web; Medicine; Data mining; Pathology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002538875,0.002387124,0.001158086,0.003126779,0.0005823186,0.002571809,0.002695334,0.001592081,0.02029716],"category_scores_gemma":[0.006563114,0.0008683955,0.001921865,0.001021227,0.0004037544,0.002617748,0.003321443,0.001884121,0.01045828],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005099443,"about_ca_system_score_gemma":0.001165169,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002774882,"about_ca_topic_score_gemma":0.003132875,"domain_scores_codex":[0.998638,0.0003234837,0.0001080539,0.0002497655,0.0005131441,0.0001675344],"domain_scores_gemma":[0.997138,0.001364091,0.0002616394,0.0003290801,0.000578577,0.0003286555],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.003247095,0.0005537539,0.008989505,0.003580409,0.0005836381,0.001739276,0.001947753,0.005301232,0.06559542,0.009357525,0.5507689,0.3483356],"study_design_scores_gemma":[0.0009915115,0.0005246084,0.01456028,0.001179576,0.0002849927,0.002514751,0.00055655,0.1551287,0.070485,0.01933431,0.7336558,0.0007839726],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.01597292,0.002117303,0.2508764,0.001813015,0.0005488388,0.0006129218,0.02163646,0.6935559,0.01286622],"genre_scores_gemma":[0.1643534,0.002514552,0.689549,0.003983707,0.0004194686,0.002371001,0.0602527,0.05629594,0.02026017],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.02029716,"threshold_uncertainty_score":0.06790078,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006941000369148651,"score_gpt":0.2366728801591424,"score_spread":0.2297318797899938,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}