{"id":"W4403601020","doi":"10.1099/mgen.0.001294","title":"Diversity, functional classification and genotyping of SHV β-lactamases in Klebsiella pneumoniae","year":2024,"lang":"en","type":"review","venue":"Microbial Genomics","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"European Commission; Joint Programming Initiative on Antimicrobial Resistance; Medical Research Council; National Institute for Health and Care Research; Bill and Melinda Gates Foundation","keywords":"Biology; Klebsiella pneumoniae; Genetics; Gene; Genotyping; Plasmid; Genome; Allele; Phylogenetic tree; Genotype; Escherichia coli","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009746663,0.0002339238,0.0003120914,0.002822597,0.0003407781,0.001131138,0.0003324394,0.0004435209,0.0003945],"category_scores_gemma":[0.002162221,0.0002071099,0.0005633662,0.002029919,0.0003183226,0.0004785442,0.0004099431,0.0003516641,0.0003930138],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003551612,"about_ca_system_score_gemma":0.0004176985,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003461742,"about_ca_topic_score_gemma":0.004036292,"domain_scores_codex":[0.9986143,0.0002472584,0.0003110414,0.0003582468,0.0003270117,0.000142117],"domain_scores_gemma":[0.9983231,0.0004708179,0.0004652129,0.0001916291,0.0004037646,0.0001454196],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0004292046,0.00006558931,0.5375335,0.0005003755,0.0001298429,0.000642327,0.001693718,0.0005607492,0.4034632,0.0002491419,0.0002463745,0.05448594],"study_design_scores_gemma":[0.000004553643,0.0002025644,0.9429643,0.00008069631,0.0001393307,0.003359942,0.001178337,0.0008245629,0.0453644,0.0001864217,0.00565796,0.00003704587],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"review","genre_scores_codex":[0.9943632,0.002056546,0.001406887,0.00005984867,0.00000789901,0.00002335579,0.001242324,0.00002211415,0.0008178069],"genre_scores_gemma":[0.9905825,0.001292287,0.004421421,0.00003747448,0.000008467014,0.00002011895,0.003066725,0.00001928241,0.0005516589],"genre_candidate":"review","genre_consensus":null,"teacher_disagreement_score":0.003461742,"threshold_uncertainty_score":0.006883204,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04638806497879486,"score_gpt":0.2827053582719736,"score_spread":0.2363172932931788,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}