{"id":"W4403647085","doi":"10.3390/v16111649","title":"Transactivation of Human Endogenous Retroviruses by Viruses","year":2024,"lang":"en","type":"review","venue":"Viruses","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":12,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research; University of British Columbia","keywords":"Transactivation; Biology; Epigenetics; Endogenous retrovirus; Endogeny; Virology; RNA; Genome; Genetics; Computational biology; Gene; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001053747,0.0003662884,0.0009024709,0.00004120324,0.0001641159,0.00007315216,0.0003676983,0.0002859248,0.0008430316],"category_scores_gemma":[0.00002783511,0.0001307757,0.0004676457,0.000595892,0.0000750446,0.00009132898,0.00005098872,0.0002134541,0.0001877537],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000407042,"about_ca_system_score_gemma":0.00003705952,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006787414,"about_ca_topic_score_gemma":0.0002274144,"domain_scores_codex":[0.9983112,0.0001203326,0.000634989,0.0004347923,0.0002603124,0.0002383663],"domain_scores_gemma":[0.9992489,0.0002500234,0.0002784989,0.0001082125,0.00004138994,0.00007304025],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000003433491,0.0001916258,0.00001579186,0.00216647,0.0002115643,0.000004848702,0.00006158787,1.090055e-7,0.116311,0.0003911885,0.002092123,0.8785502],"study_design_scores_gemma":[0.0000325707,0.0002237854,0.000009674976,0.001633532,0.0006681894,0.0000107696,0.00001839316,1.174621e-7,0.003644771,0.0002177869,0.9932494,0.0002909786],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.002189918,0.994162,8.795634e-7,0.00001580318,0.000188907,0.0004111762,0.002307362,0.0001193412,0.0006045651],"genre_scores_gemma":[0.002740018,0.996281,0.00001177687,0.00009378412,0.0003272298,0.0000762641,0.0002989025,0.000006086807,0.0001649017],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9911573,"threshold_uncertainty_score":0.9230605,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1469020373488154,"score_gpt":0.3239875476903605,"score_spread":0.1770855103415451,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}