{"id":"W4403718011","doi":"10.1016/j.cell.2024.10.017","title":"Clade I mpox virus genomic diversity in the Democratic Republic of the Congo, 2018–2024: Predominance of zoonotic transmission","year":2024,"lang":"en","type":"article","venue":"Cell","topic":"Poxvirus research and outbreaks","field":"Immunology and Microbiology","cited_by":99,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Manitoba","funders":"Canadian Institutes of Health Research; Defense Threat Reduction Agency; Agence Française de Développement; U.S. Department of Defense; World Health Organization; Campus France; Fonds Wetenschappelijk Onderzoek; Agence Nationale de Recherches sur le Sida et les Hépatites Virales; U.S. Department of Agriculture; Institut de Recherche pour le Développement; Wellcome Trust; International Development Research Centre","keywords":"Clade; Biology; Transmission (telecommunications); Evolutionary biology; Genome; Genetic diversity; Genetics; Virology; Zoology; Phylogenetics; Gene; Demography; Population","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003784762,0.0000925995,0.0001751463,0.00007296907,0.0001189994,0.000008573189,0.0005604426,0.0001404228,0.0004042216],"category_scores_gemma":[0.0000381827,0.00005207223,0.0001174405,0.0002196341,0.0003188261,0.0000546723,0.0001888794,0.0003969381,0.00008893434],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003069188,"about_ca_system_score_gemma":0.0001314115,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003764054,"about_ca_topic_score_gemma":0.0000606004,"domain_scores_codex":[0.9989713,0.0003274718,0.0002242651,0.000179913,0.00005886309,0.000238177],"domain_scores_gemma":[0.9993311,0.0002462761,0.00005631024,0.0003295536,0.00002248035,0.00001427024],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001214541,0.0001119029,0.0007676315,0.0001824719,0.0000387807,0.000007915048,0.002386661,0.000009853375,0.9759313,0.0001816092,0.01708855,0.003171836],"study_design_scores_gemma":[0.001481149,0.0002950031,0.06464465,0.0002285437,0.00009947283,0.00003196896,0.0004435451,0.0001882892,0.845045,0.002114603,0.08524,0.0001878035],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.979809,0.01346358,0.00008858146,0.0003387532,0.000402697,0.0003305665,0.00005016875,0.00001102848,0.005505608],"genre_scores_gemma":[0.9928553,0.0004338314,0.00001100189,0.00006314296,0.00001113777,0.00000566161,0.000006171574,0.000005992215,0.006607768],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1308864,"threshold_uncertainty_score":0.4425943,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01930812383065638,"score_gpt":0.2394654182670935,"score_spread":0.2201572944364371,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}