{"id":"W4403718011","doi":"10.1016/j.cell.2024.10.017","title":"Clade I mpox virus genomic diversity in the Democratic Republic of the Congo, 2018–2024: Predominance of zoonotic transmission","year":2024,"lang":"en","type":"article","venue":"Cell","topic":"Poxvirus research and outbreaks","field":"Immunology and Microbiology","cited_by":99,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Manitoba","funders":"Canadian Institutes of Health Research; Defense Threat Reduction Agency; Agence Française de Développement; U.S. Department of Defense; World Health Organization; Campus France; Fonds Wetenschappelijk Onderzoek; Agence Nationale de Recherches sur le Sida et les Hépatites Virales; U.S. Department of Agriculture; Institut de Recherche pour le Développement; Wellcome Trust; International Development Research Centre","keywords":"Clade; Biology; Transmission (telecommunications); Evolutionary biology; Genome; Genetic diversity; Genetics; Virology; Zoology; Phylogenetics; Gene; Demography; Population","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001521398,0.0001107582,0.00008889128,0.0006412101,0.0003932754,0.0004992256,0.0001395376,0.0001739877,0.001359982],"category_scores_gemma":[0.0004989319,0.00008608024,0.00009352598,0.000537982,0.0002936807,0.0002437354,0.0002795857,0.0001744024,0.00009950926],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005868085,"about_ca_system_score_gemma":0.0003104358,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.02741077,"about_ca_topic_score_gemma":0.03607311,"domain_scores_codex":[0.9998984,0.0000223663,0.000006378416,0.00002668918,0.000009166323,0.00003691951],"domain_scores_gemma":[0.9998047,0.00002646695,0.00009654425,0.00001089936,0.00002485034,0.00003650907],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002765977,0.00001726775,0.9734417,0.00005029922,0.00005535395,0.0004225073,0.002516386,0.0001455689,0.0119115,0.0003615177,0.0006894105,0.01011186],"study_design_scores_gemma":[0.000002886816,0.00002512623,0.9950355,0.00002280975,0.00001780703,0.0004648768,0.002237719,0.00007857083,0.0004018169,0.00003258144,0.001677123,0.000003184286],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.998081,0.0002671138,0.00006792333,0.0001020366,0.000003642582,0.000005125423,0.0007271746,0.000002256375,0.0007436304],"genre_scores_gemma":[0.9993513,0.0001160065,0.00004548745,0.00002619039,0.000003146564,0.000005339108,0.0002225385,0.000001355807,0.0002286318],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02741077,"threshold_uncertainty_score":0.05450243,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01930812383065638,"score_gpt":0.2394654182670935,"score_spread":0.2201572944364371,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}