{"id":"W4403745305","doi":"10.3389/fgene.2024.1478788","title":"Genome-wide association and functional genomic analyses for body conformation traits in North American Holstein cattle","year":2024,"lang":"en","type":"article","venue":"Frontiers in Genetics","topic":"Genetic and phenotypic traits in livestock","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"Agriculture and Agri-Food Canada; Fundação de Amparo à Pesquisa do Estado da Bahia; Conselho Nacional de Desenvolvimento Científico e Tecnológico; Canadian Dairy Commission; Dairy Farmers of Canada","keywords":"Single-nucleotide polymorphism; Biology; Genome-wide association study; Quantitative trait locus; SNP; Genetics; Genetic association; Trait; Candidate gene; Genotype; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001027623,0.0002088552,0.0002911807,0.0008249336,0.0006091073,0.0004019469,0.0002552297,0.0002829225,0.001015058],"category_scores_gemma":[0.0007402138,0.0001532932,0.0005370091,0.001260878,0.0002820792,0.0001062084,0.0002751909,0.0002937129,0.00008303923],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002268757,"about_ca_system_score_gemma":0.0004187753,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0178571,"about_ca_topic_score_gemma":0.04780446,"domain_scores_codex":[0.9994878,0.0001872481,0.00002815887,0.0001684264,0.00007422718,0.00005419825],"domain_scores_gemma":[0.9994362,0.0002450369,0.0001083442,0.00005885532,0.00008523133,0.00006639684],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0007454629,0.0001203788,0.9679539,0.00004730639,0.000714125,0.00031867,0.0003746171,0.0005457497,0.01672843,0.00006613599,0.0002027745,0.01218245],"study_design_scores_gemma":[0.000006972416,0.00001988064,0.9993525,0.000001651793,0.00007862175,0.00003945892,0.00004249925,0.0002422741,0.00008907585,0.00001191123,0.0001135768,0.000001652892],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9992201,0.0001550614,0.000280406,0.00001671135,0.000001259166,0.000004185667,0.0002130679,0.000004021522,0.0001050675],"genre_scores_gemma":[0.9974198,0.0001497964,0.001077533,0.00003116847,0.00000601447,0.00002473752,0.0008924485,0.000004409904,0.0003940474],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9821429,"threshold_uncertainty_score":0.03550631,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01212748133767752,"score_gpt":0.2460745009761852,"score_spread":0.2339470196385077,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}