{"id":"W4403806209","doi":"10.1101/2024.10.23.619697","title":"A pangenome and pantranscriptome of hexaploid oat","year":2024,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Plant Disease Resistance and Genetics","field":"Agricultural and Biological Sciences","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"Genome Canada; University of Toronto; Ste. Anne's Hospital; University of Manitoba; Université Laval; McGill University; Agriculture and Agri-Food Canada","funders":"","keywords":"Biology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001115719,0.0003689655,0.0002995749,0.0007246928,0.0003183444,0.0006028354,0.0001512518,0.0002665983,0.002369343],"category_scores_gemma":[0.0002983192,0.0002340157,0.0004670504,0.00137184,0.000196992,0.0005027271,0.0005297629,0.0005767239,0.000751514],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000320598,"about_ca_system_score_gemma":0.0002934386,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001696278,"about_ca_topic_score_gemma":0.002974265,"domain_scores_codex":[0.9998571,0.000008181364,0.00001022921,0.00007852593,0.00002412564,0.00002182153],"domain_scores_gemma":[0.9998005,0.00003446858,0.00004464195,0.00003879922,0.00003376133,0.00004785484],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002385852,0.000009988471,0.004219949,0.0001300696,0.00002784043,0.0002061707,0.0002405801,0.0001496586,0.9854434,0.0003184853,0.0001941277,0.008821031],"study_design_scores_gemma":[0.00006040376,0.0003772426,0.7235661,0.0001136691,0.0002665366,0.002709136,0.00108315,0.002632038,0.1981448,0.002240808,0.06874632,0.00005990626],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9584864,0.002571578,0.01283526,0.0002764245,0.00007621718,0.00003683163,0.02089433,0.0003705878,0.004452424],"genre_scores_gemma":[0.8536664,0.003703651,0.02280546,0.0005034693,0.00008254077,0.000116018,0.1045915,0.0007071606,0.01382376],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002369343,"threshold_uncertainty_score":0.007926226,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01309032641285648,"score_gpt":0.1907934338056292,"score_spread":0.1777031073927728,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}