{"id":"W4403854157","doi":"10.1093/sysbio/syae060","title":"Complex Hybridization in a Clade of Polytypic Salamanders (Plethodontidae: <i>Desmognathus</i> ) Uncovered by Estimating Higher-Level Phylogenetic Networks","year":2024,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Genetic diversity and population structure","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"National Museum of Natural History; National Science Foundation","keywords":"Biology; Clade; Evolutionary biology; Phylogenetic tree; Introgression; Sympatric speciation; Range (aeronautics); Ecology; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006651477,0.0002208166,0.0002226326,0.001254719,0.0004330515,0.0006696625,0.0004114859,0.0004924867,0.000540837],"category_scores_gemma":[0.003179921,0.000236116,0.0003145924,0.0006694896,0.0003971517,0.0007425559,0.0006232202,0.0003404771,0.0001058398],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004002765,"about_ca_system_score_gemma":0.0001996579,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00215421,"about_ca_topic_score_gemma":0.004952521,"domain_scores_codex":[0.999657,0.0001316361,0.00001887506,0.0001305899,0.00003457642,0.00002740724],"domain_scores_gemma":[0.9987465,0.0006352557,0.0003861198,0.0001178711,0.00005757721,0.00005657169],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001613541,0.00008754474,0.8222227,0.0001640286,0.0003225175,0.0002263216,0.00108114,0.1039167,0.02759413,0.00330174,0.0003116348,0.0406103],"study_design_scores_gemma":[0.00001186641,0.0000726166,0.3955398,0.00002991769,0.00008529815,0.000246329,0.0005694391,0.5931568,0.002463245,0.007044837,0.0007523714,0.00002751756],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9921968,0.00006200014,0.007248858,0.00002786262,8.574478e-7,0.000007815134,0.00008472523,0.0000294188,0.0003417575],"genre_scores_gemma":[0.9950441,0.00002492523,0.004654427,0.00000766415,0.000001992639,0.000006964977,0.0002184189,0.000004121727,0.0000374136],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00215421,"threshold_uncertainty_score":0.004283369,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02985144924104458,"score_gpt":0.2739927164527405,"score_spread":0.244141267211696,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}