{"id":"W4403921527","doi":"10.1016/j.virol.2024.110279","title":"The packaging signal of Xanthomonas integrative filamentous phages","year":2024,"lang":"en","type":"article","venue":"Virology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":0,"is_retracted":false,"has_abstract":false,"ca_institutions":"Nexen (Canada)","funders":"","keywords":"Biology; Xanthomonas; Microbiology; SIGNAL (programming language); Bacteria; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002936681,0.000319868,0.0001717465,0.0002544427,0.0002811001,0.0006153586,0.0001458044,0.0004218658,0.00109367],"category_scores_gemma":[0.0005321603,0.000178878,0.0002070535,0.0001870069,0.0002339189,0.0004568408,0.0003338022,0.0005583504,0.0004148718],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003204501,"about_ca_system_score_gemma":0.0001452019,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002519097,"about_ca_topic_score_gemma":0.0001793582,"domain_scores_codex":[0.9998945,0.0000261784,0.000005936147,0.00001656963,0.00003034981,0.0000263841],"domain_scores_gemma":[0.9997162,0.0001240477,0.00004811644,0.00002403956,0.00003196211,0.00005554279],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001501155,0.000009335288,0.0004601533,0.00001946692,0.000002301141,0.00009223559,0.00005925294,0.00004852629,0.9975388,0.0004784805,0.0000343747,0.001107032],"study_design_scores_gemma":[0.00001924297,0.0002723277,0.01201826,0.00001490322,0.00001222204,0.0003435625,0.0001618962,0.001301903,0.9838539,0.0003657163,0.001623863,0.00001225806],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9969297,0.0003283869,0.001708832,0.00006574921,0.00001739841,0.000004544576,0.00003921054,0.00002475772,0.0008814559],"genre_scores_gemma":[0.9974443,0.0001532794,0.0009388927,0.00003583843,0.00001578938,0.00000469916,0.0001353581,0.00001644036,0.001255365],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00109367,"threshold_uncertainty_score":0.003658652,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00430899939614303,"score_gpt":0.2429625005910063,"score_spread":0.2386535011948632,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}