{"id":"W4403923272","doi":"10.3390/microorganisms12112187","title":"How Trustworthy Are the Genomic Sequences of SARS-CoV-2 in GenBank?","year":2024,"lang":"en","type":"article","venue":"Microorganisms","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Ottawa","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"GenBank; Genome; Annotation; Biology; Phylogenetic tree; Genetics; Computational biology; Genome project; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["metaresearch","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0825638,0.0007879414,0.00195909,0.01270941,0.002072552,0.01183546,0.002739473,0.004844102,0.004787039],"category_scores_gemma":[0.3400132,0.001259655,0.0008352777,0.01042607,0.00565092,0.01913568,0.003191665,0.003775982,0.008209029],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002255789,"about_ca_system_score_gemma":0.006642343,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006773712,"about_ca_topic_score_gemma":0.00380847,"domain_scores_codex":[0.9270834,0.03319337,0.01435706,0.008158644,0.01555064,0.001657014],"domain_scores_gemma":[0.6680242,0.1616618,0.03471368,0.06355676,0.06656191,0.005481513],"domain_codex":null,"domain_gemma":"reproducibility","domain_candidate":"reproducibility","domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"observational","study_design_scores_codex":[0.00337984,0.0004293376,0.1955492,0.007033307,0.0009904997,0.005584177,0.02314783,0.004964846,0.0243111,0.05086692,0.1091333,0.5746096],"study_design_scores_gemma":[0.0002978043,0.0005782075,0.09691643,0.01391735,0.001194982,0.007104999,0.03436161,0.01655353,0.01960603,0.09250487,0.716134,0.0008302241],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"commentary","genre_gemma":"empirical","genre_scores_codex":[0.2748156,0.0814428,0.2269115,0.3170746,0.01340035,0.0008350575,0.03865126,0.005406837,0.04146193],"genre_scores_gemma":[0.6481182,0.03800925,0.2405196,0.02225346,0.004175663,0.0005348326,0.03946372,0.002635085,0.004290138],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.9951559,"threshold_uncertainty_score":0.4366443,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04755243426054495,"score_gpt":0.3264903501455877,"score_spread":0.2789379158850428,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}