{"id":"W4403959930","doi":"10.1016/j.cell.2024.09.033","title":"Viroid-like colonists of human microbiomes","year":2024,"lang":"en","type":"article","venue":"Cell","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":44,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Toronto","funders":"National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences; Canadian Institutes of Health Research; Stand Up To Cancer; National Institutes of Health; University of British Columbia; School of Medicine, Stanford University; American Welding Society; Universitat de València; Generalitat Valenciana; University of Toronto; Allen Institute; Division of Intramural Research, National Institute of Allergy and Infectious Diseases","keywords":"Biology; Microbiome; Viroid; Evolutionary biology; Ecology; Virology; Computational biology; Genetics; Plant virus; Virus","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001735374,0.0001719145,0.0001658311,0.0005239992,0.0004337218,0.0006223729,0.00009704782,0.0002848621,0.002427526],"category_scores_gemma":[0.0003974667,0.0001112314,0.000189623,0.0003174637,0.0002730771,0.0003006743,0.0004773265,0.0002309168,0.0002814984],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001178194,"about_ca_system_score_gemma":0.0001895907,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000966507,"about_ca_topic_score_gemma":0.001396864,"domain_scores_codex":[0.9998852,0.00002936104,0.000004369038,0.00003060951,0.00002115541,0.0000293262],"domain_scores_gemma":[0.9998455,0.00002520561,0.00003615975,0.00001845715,0.00001998114,0.00005470044],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001325435,0.00003380551,0.09505704,0.0002108592,0.00006458326,0.001009839,0.001466283,0.0001607216,0.876103,0.001690035,0.0007338247,0.02214462],"study_design_scores_gemma":[0.00009955122,0.001145147,0.7213432,0.0002281155,0.0002251345,0.01335442,0.01138948,0.00203827,0.1923449,0.004120696,0.05362224,0.00008877572],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.994408,0.002399236,0.0008885369,0.0001302821,0.00002239889,0.00001025837,0.0001889972,0.00002820855,0.001924017],"genre_scores_gemma":[0.9963658,0.0009341547,0.001280993,0.00007337944,0.00001607209,0.000008382382,0.0001953489,0.000008611275,0.001117265],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002427526,"threshold_uncertainty_score":0.008120835,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007481298379652619,"score_gpt":0.2420014577870513,"score_spread":0.2345201594073986,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}