{"id":"W4404021056","doi":"10.1128/aac.01038-24","title":"Analysis of <i>Acinetobacter</i> P-type type IV secretion system-encoding plasmid diversity uncovers extensive secretion system conservation and diverse antibiotic resistance determinants","year":2024,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institute of Infection and Immunity; University of Ottawa","funders":"Canadian Institutes of Health Research","keywords":"Plasmid; Biology; Acinetobacter baumannii; Microbiology; Acinetobacter; Horizontal gene transfer; Virulence; Gene; Antibiotic resistance; Pathogen; Genetics; Human pathogen; Antibiotics; Bacteria; Phylogenetics; Pseudomonas aeruginosa","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000180605,0.0003233357,0.0002529754,0.001385715,0.0002335497,0.0005500343,0.0001777531,0.0002710352,0.0007685437],"category_scores_gemma":[0.0004985321,0.0001227817,0.0004219301,0.001293759,0.0002139961,0.000230029,0.0004208231,0.0003702025,0.0003150216],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002069804,"about_ca_system_score_gemma":0.0002499228,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001164333,"about_ca_topic_score_gemma":0.001003445,"domain_scores_codex":[0.999665,0.00004247947,0.00004140771,0.0001124116,0.00007033198,0.00006842212],"domain_scores_gemma":[0.9995043,0.0000827338,0.0002107667,0.00004511602,0.00008439326,0.00007267894],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002820059,0.00006468678,0.06893896,0.0001414458,0.00007746949,0.0001992911,0.0001877012,0.0001516027,0.9192094,0.00009785948,0.0001377753,0.01051177],"study_design_scores_gemma":[0.00001858225,0.0005983732,0.8536466,0.00005811367,0.0001899894,0.003089074,0.0006900136,0.001609503,0.1340901,0.0001580699,0.005823273,0.00002838987],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9961893,0.0004636042,0.001074483,0.00003614519,0.000004628468,0.00002187577,0.001697931,0.00002852315,0.0004834621],"genre_scores_gemma":[0.9940896,0.000239479,0.001662918,0.00003350973,0.000005758571,0.00002026974,0.003603072,0.00001269947,0.0003326331],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001385715,"threshold_uncertainty_score":0.002571046,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.011820533203006,"score_gpt":0.2395743100134616,"score_spread":0.2277537768104556,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}