{"id":"W4404054617","doi":"10.1186/s12864-024-10929-4","title":"A chromosome-level genome assembly of a model conifer plant, the Japanese cedar, Cryptomeria japonica D. Don","year":2024,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":16,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Institute for Basic Biology; Institute of Genetics; Institute for Chemical Research, Kyoto University; Bio-oriented Technology Research Advancement Institution; Japan Society for the Promotion of Science; Ministry of Agriculture, Forestry and Fisheries; Forestry and Forest Products Research Institute","keywords":"Biology; Cryptomeria; Japonica; Contig; Genome; Sequence assembly; Genetics; Reference genome; Gene; Botany","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017161,0.0005286827,0.0003024779,0.000534257,0.0004833934,0.0003646253,0.0003194752,0.0003241187,0.00185127],"category_scores_gemma":[0.0002501357,0.0002898835,0.0004162897,0.0005178719,0.0001337799,0.0002391605,0.0002741939,0.0004823198,0.0007285894],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003446642,"about_ca_system_score_gemma":0.0005426728,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006309848,"about_ca_topic_score_gemma":0.01211307,"domain_scores_codex":[0.9999082,0.000005310296,0.00000535553,0.00005026516,0.0000188217,0.00001200919],"domain_scores_gemma":[0.9998703,0.00002456572,0.00002233243,0.00001629599,0.00003744003,0.00002907153],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001434035,0.00002617606,0.002126261,0.0001834731,0.00002112936,0.0002811542,0.0001746772,0.001574125,0.9859188,0.0002819793,0.0005524629,0.008716361],"study_design_scores_gemma":[0.0001087183,0.0007442003,0.1209958,0.0001475646,0.0003549868,0.002145555,0.0005605578,0.05022714,0.7615169,0.0007282476,0.06235001,0.0001203182],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8924624,0.001323039,0.08508851,0.0001607804,0.0001082632,0.0001401929,0.01287906,0.001800958,0.006036646],"genre_scores_gemma":[0.7593352,0.0008806926,0.1799462,0.0001090791,0.00001793476,0.0001902612,0.04941644,0.0007237401,0.009380369],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006309848,"threshold_uncertainty_score":0.01254624,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03517922828369122,"score_gpt":0.260673638334052,"score_spread":0.2254944100503608,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}