{"id":"W4404060254","doi":"10.3390/ijpb15040079","title":"Genome-Wide Analysis of the Class III Peroxidase Gene Family in Physcomitrium patens and a Search for Clues to Ancient Class III Peroxidase Functions","year":2024,"lang":"en","type":"article","venue":"International Journal of Plant Biology","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Regina","funders":"","keywords":"Peroxidase; Class (philosophy); Genome; Gene; Biology; Genetics; Computational biology; Gene family; Evolutionary biology; Computer science; Enzyme; Artificial intelligence; Biochemistry","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004012519,0.00009936038,0.0002060791,0.0003801392,0.00002771668,0.00002042072,0.0002003316,0.00008825651,0.000005301571],"category_scores_gemma":[0.00007397366,0.00006831522,0.0001751469,0.0002233859,0.00005519975,0.000005821144,0.00008261883,0.0001220243,6.186041e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003733808,"about_ca_system_score_gemma":0.00007662559,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006506623,"about_ca_topic_score_gemma":0.00006976374,"domain_scores_codex":[0.9991572,0.00005192386,0.000345382,0.0002046119,0.00009999749,0.0001408949],"domain_scores_gemma":[0.9994755,0.00003046174,0.00008747506,0.0001064259,0.0002495795,0.00005056781],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002815887,0.0000484252,0.002053394,0.000009606923,0.0006758106,0.000004506999,0.0001050445,0.003032258,0.9926526,0.00006744121,0.0006205072,0.0004488258],"study_design_scores_gemma":[0.001723913,0.0007878496,0.1119074,0.0001072673,0.0005157115,0.0002116566,0.000418545,0.00293164,0.7271711,0.0000260913,0.1538834,0.0003154138],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9882396,0.001593175,0.00750504,0.001007803,0.0009858621,0.0001206276,0.0005327862,0.00000308476,0.00001204586],"genre_scores_gemma":[0.9983978,0.0003755636,0.0002507863,0.0002091757,0.0004401568,0.00000636702,0.0001639613,0.000006862101,0.0001492705],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2654815,"threshold_uncertainty_score":0.2785814,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0121102680427436,"score_gpt":0.257348351760101,"score_spread":0.2452380837173574,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}