{"id":"W4404108780","doi":"10.1128/mra.00563-24","title":"Complete genome sequence of <i>Flavobacterium</i> <scp>s</scp> p. strain CFS9, a potential fish probiotic isolated from the body surface of <i>Silurus asotus</i>","year":2024,"lang":"en","type":"article","venue":"Microbiology Resource Announcements","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institute of Genetics; JST-Mirai Program; Japan Science and Technology Agency; Ministry of Education, Culture, Sports, Science and Technology","keywords":"Whole genome sequencing; Probiotic; Strain (injury); Flavobacterium; Biology; Genome; Fish <Actinopterygii>; Open reading frame; Gene; Genetics; Microbiology; Fishery; Bacteria; Anatomy; Peptide sequence","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002912622,0.0003258707,0.0004114957,0.00003476758,0.0001265919,0.00003491208,0.0006013388,0.0002415266,0.00001583343],"category_scores_gemma":[0.00004116011,0.0002602426,0.000197298,0.0001801593,0.0005152761,0.000002468042,0.0004105085,0.0001891928,0.00001329907],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002207945,"about_ca_system_score_gemma":0.0001118742,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001024862,"about_ca_topic_score_gemma":0.00002841263,"domain_scores_codex":[0.9980493,0.0001991591,0.0005633578,0.0006258551,0.00009327386,0.0004690748],"domain_scores_gemma":[0.9989327,0.00009154897,0.0002362427,0.0005436276,0.0001406283,0.00005531194],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00004932667,0.00007263653,0.001623945,0.00005485042,0.0006680716,0.000008173514,0.0004022848,0.0002934234,0.9911182,0.000006022742,0.005644502,0.00005856788],"study_design_scores_gemma":[0.0008341525,0.0008142337,0.002107261,0.000102191,0.0002040694,0.00006825949,0.0005349725,0.0001115844,0.110736,0.00004638301,0.8842091,0.0002318447],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9576659,0.005512486,0.0002468814,0.0002212064,0.0002983215,0.0004454593,0.03539082,0.00001110003,0.0002078656],"genre_scores_gemma":[0.9887547,0.0004259749,0.0002714508,0.0006511644,0.0001535925,0.00001153813,0.00904282,0.00003970654,0.000649084],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8803822,"threshold_uncertainty_score":0.999985,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01159864312054024,"score_gpt":0.2170071974533513,"score_spread":0.2054085543328111,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}