{"id":"W4404196329","doi":"10.3389/fcimb.2024.1466333","title":"Association between genetic clades and cancer prevalence suggested by French-wide study of oncogenic small ruminant β-retrovirus diversity","year":2024,"lang":"en","type":"article","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Infectious Diseases and Mycology","field":"Veterinary","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"VetAgro Sup; Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement; Agence Nationale de la Recherche","keywords":"Biology; Clade; Flock; Genetic diversity; Enzootic; Phylogenetic tree; Virology; Genome; Retrovirus; Phylogenetics; Genetics; Virus; Gene; Ecology; Medicine; Population","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007518865,0.0001648974,0.0001833893,0.001032759,0.000347505,0.0005623976,0.0001931702,0.0002923537,0.001264901],"category_scores_gemma":[0.001108449,0.0001001837,0.0002694478,0.000489795,0.0003185818,0.0002253364,0.0002112715,0.0001762779,0.00009074933],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004194467,"about_ca_system_score_gemma":0.0003042354,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01837408,"about_ca_topic_score_gemma":0.02302491,"domain_scores_codex":[0.999563,0.000137783,0.00002621271,0.0001414405,0.00004750833,0.00008394077],"domain_scores_gemma":[0.9991954,0.0001709106,0.000301738,0.00006269426,0.0001373417,0.0001319728],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00005764494,0.000004239029,0.9970694,0.000005873887,0.00003439016,0.00005187414,0.0001246956,0.00003754567,0.001491001,0.00003072178,0.00004364222,0.001048935],"study_design_scores_gemma":[0.000001039367,0.00002538533,0.9992895,0.000003368172,0.00001116724,0.0001673584,0.0001438948,0.00009509802,0.00006524414,0.00000928558,0.0001872247,0.000001405488],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9992519,0.0002073626,0.0001108885,0.00002563678,0.00000137229,0.000002822592,0.0001329504,0.000003455306,0.0002634863],"genre_scores_gemma":[0.9996774,0.0000537514,0.00007603272,0.000008195418,0.000002502147,0.00000194825,0.0001200793,9.966548e-7,0.00005893064],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01837408,"threshold_uncertainty_score":0.03653425,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01457009685650679,"score_gpt":0.2525647742865688,"score_spread":0.237994677430062,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}