{"id":"W4404200262","doi":"10.1093/infdis/jiae554","title":"Fitness of SARS-CoV-2 Omicron Subvariants in Respiratory and Gastrointestinal Cell Lines as Determined by Reverse-Transcription Droplet Digital PCR and Whole-Genome Sequencing","year":2024,"lang":"en","type":"article","venue":"The Journal of Infectious Diseases","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institut National de Santé Publique du Québec; Université Laval; Centre hospitalier universitaire de Québec","funders":"Canadian Institutes of Health Research","keywords":"Coronavirus disease 2019 (COVID-19); Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Virology; Genome; 2019-20 coronavirus outbreak; Whole genome sequencing; Biology; Medicine; Genetics; Gene; Pathology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003295678,0.0002878848,0.000417032,0.0002455096,0.0001924355,0.0004231324,0.0002080023,0.000294182,0.001200896],"category_scores_gemma":[0.0003819797,0.0001687938,0.0002780156,0.000354275,0.0001728533,0.0002161822,0.0003096215,0.0003769498,0.0003901363],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002504397,"about_ca_system_score_gemma":0.0001359821,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001718696,"about_ca_topic_score_gemma":0.002074485,"domain_scores_codex":[0.9994549,0.0001069535,0.00007876602,0.0001254054,0.0001708976,0.00006310965],"domain_scores_gemma":[0.9997361,0.00008644207,0.0000404097,0.00005679697,0.00005145395,0.0000287689],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001425702,0.0000408894,0.001991378,0.00002338701,0.000009854074,0.00002658082,0.00004523201,0.00009951759,0.9967338,0.0000553049,0.00004965817,0.0007819085],"study_design_scores_gemma":[0.00002698679,0.001660627,0.07070831,0.00001018538,0.00004709053,0.0006950094,0.000283216,0.004647735,0.9197081,0.0001054593,0.002076243,0.00003095927],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9952426,0.0002964336,0.0022251,0.0000274673,0.00001200651,0.0000491231,0.001417185,0.00002319955,0.0007069282],"genre_scores_gemma":[0.9816346,0.0003858995,0.00857451,0.00008296414,0.00001128596,0.000189222,0.00659422,0.00004812199,0.002479284],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001718696,"threshold_uncertainty_score":0.004017353,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02827507427588717,"score_gpt":0.3038160580622933,"score_spread":0.2755409837864061,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}