{"id":"W4404248995","doi":"10.1017/ice.2024.178","title":"Transmission of MRSA, ESBL <i>E. coli</i>, and <i>C. difficile</i> within a tertiary care hospital and across surrounding facilities in Japan: a molecular epidemiological study with the PCR-based Open-reading frame typing","year":2024,"lang":"en","type":"article","venue":"Infection Control and Hospital Epidemiology","topic":"Urinary Tract Infections Management","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Japan Society for the Promotion of Science","keywords":"Epidemiology; Tertiary care; Molecular epidemiology; Transmission (telecommunications); C difficile; University hospital; Medicine; Microbiology; Virology; Family medicine; Clostridium difficile; Internal medicine; Biology; Genotype; Antibiotics; Telecommunications; Genetics; Computer science; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002250666,0.0003263558,0.0009495206,0.0001634004,0.000241768,0.00006754158,0.00007865739,0.0001913676,0.000006733608],"category_scores_gemma":[0.0006143107,0.0002020696,0.00009213202,0.0002300049,0.0004834439,0.0002288609,0.000101039,0.0005676329,9.090102e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009179926,"about_ca_system_score_gemma":0.00005219699,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002729928,"about_ca_topic_score_gemma":0.0001984013,"domain_scores_codex":[0.9974479,0.0007315186,0.0006811412,0.000644029,0.0001017656,0.0003936609],"domain_scores_gemma":[0.9972065,0.002192161,0.0001771921,0.0002156895,0.00007812186,0.0001303007],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004294545,0.0007802301,0.9813368,0.0005469522,0.0002951099,0.00007742688,0.005998032,0.001173589,0.0005736192,0.001475495,0.00003308756,0.007280152],"study_design_scores_gemma":[0.004925865,0.01280206,0.9577007,0.0007196887,0.0003025557,0.00008736776,0.007829113,0.01329421,0.00004499924,0.0004601592,0.00145987,0.00037339],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9744126,0.004550549,0.01258203,0.005840433,0.0001873857,0.00222972,0.00001987971,0.000084975,0.00009241667],"genre_scores_gemma":[0.9982617,0.0002083341,0.0002156894,0.0008737526,0.00004349141,0.0003375922,0.00001053132,0.00002288912,0.00002603525],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02384908,"threshold_uncertainty_score":0.824016,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01752819623356903,"score_gpt":0.3109103905936204,"score_spread":0.2933821943600514,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}