{"id":"W4404297591","doi":"10.1016/j.future.2024.107585","title":"In silico framework for genome analysis","year":2024,"lang":"en","type":"article","venue":"Future Generation Computer Systems","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"ca_institutions":"Université du Québec à Montréal","funders":"Natural Science Foundation of Shandong Province","keywords":"Computer science; In silico; Data science; Biology; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001572371,0.0001272901,0.0001754224,0.0001192365,0.00005645291,0.0001230565,0.000103285,0.0001400121,0.000003433826],"category_scores_gemma":[0.000003712836,0.0001154447,0.0001383142,0.0002428515,0.000009787141,0.000001149191,0.00004218195,0.00004880397,0.000005092909],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001630782,"about_ca_system_score_gemma":0.00003022735,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001052458,"about_ca_topic_score_gemma":0.00005608351,"domain_scores_codex":[0.9991388,0.00004070465,0.0002240804,0.0003774995,0.00006693182,0.0001520013],"domain_scores_gemma":[0.9996343,0.00001409587,0.00003171444,0.0002290401,0.00005680928,0.00003399187],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00004966243,0.0001077358,0.002823858,0.0003941816,0.003920408,0.00001678737,0.001756501,0.202775,0.5266827,0.04488073,0.2120634,0.004529021],"study_design_scores_gemma":[0.0001534677,0.000141435,0.001747194,0.00001013591,0.0001032727,0.00000661273,0.00004749225,0.06899749,0.001825572,0.00004525635,0.9266774,0.0002446634],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.1565211,0.0250351,0.7914149,0.0004764076,0.02608373,0.0003568431,0.00006909759,0.000009116106,0.00003372763],"genre_scores_gemma":[0.832344,0.0003181884,0.02146888,0.0004179507,0.1443991,0.0001998738,0.000374429,0.00002968174,0.000447903],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.769946,"threshold_uncertainty_score":0.4707699,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.012920742674165,"score_gpt":0.2562877058193001,"score_spread":0.2433669631451351,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}