{"id":"W4404382241","doi":"10.1016/j.freeradbiomed.2024.10.023","title":"CONFIDENCE: A Web App for Cross-Platform Differential Gene Expression Analysis, Gene Scoring, and Enrichment Analysis","year":2024,"lang":"en","type":"article","venue":"Free Radical Biology and Medicine","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Queen's University","funders":"Queen's University","keywords":"Gene; Differential (mechanical device); Gene expression; Computational biology; Genetics; Biology; Engineering","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002611554,0.00264713,0.001527135,0.003633276,0.0005458161,0.001835588,0.002935856,0.001784192,0.07593947],"category_scores_gemma":[0.005013904,0.001502032,0.001317706,0.001460176,0.0004333251,0.001949794,0.003155113,0.001970448,0.03893233],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000572084,"about_ca_system_score_gemma":0.0009897745,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001122827,"about_ca_topic_score_gemma":0.002003424,"domain_scores_codex":[0.9987025,0.0001697201,0.0001180573,0.000248676,0.0006419024,0.0001189824],"domain_scores_gemma":[0.9967968,0.001943388,0.0002483539,0.0002759982,0.0005124133,0.0002231038],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.002222242,0.0004867705,0.00561465,0.002485398,0.0005754334,0.001506909,0.0003276289,0.003665303,0.0344873,0.004393538,0.7109664,0.2332683],"study_design_scores_gemma":[0.0017562,0.0006327885,0.02978444,0.001146678,0.0003670176,0.003761837,0.0002701546,0.1522644,0.08339063,0.03563772,0.6898052,0.001182949],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.005477203,0.0009214045,0.2384218,0.0004670865,0.0004161816,0.000805746,0.05079746,0.6941785,0.008514653],"genre_scores_gemma":[0.07209319,0.001741959,0.5986177,0.004787917,0.0006485733,0.009177521,0.1203492,0.1472461,0.04533789],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.07593947,"threshold_uncertainty_score":0.2540429,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01023678038383229,"score_gpt":0.2980013273920333,"score_spread":0.287764547008201,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}