{"id":"W4404414223","doi":"10.1111/mmi.15329","title":"Comparative Multi‐Omics Survey Reveals Novel Specialized Metabolites and Biosynthetic Gene Clusters Under <scp>GacS</scp> Control in <i>Pseudomonas donghuensis</i> Strain <scp>SVBP6</scp>","year":2024,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Fondo para la Investigación Científica y Tecnológica; Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Universidad Nacional de Quilmes; Consejo Nacional de Investigaciones Científicas y Técnicas; Deutsche Forschungsgemeinschaft","keywords":"Biology; In silico; Gene; Transcriptome; Mutant; Genome; Metabolomics; Proteomics; Pseudomonas; Function (biology); Metabolite; Computational biology; Extracellular; Biochemistry; Bacteria; Genetics; Gene expression; Bioinformatics","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001668762,0.0006306352,0.0006390535,0.001309791,0.000420234,0.0007698312,0.0002136733,0.0003341139,0.0009972146],"category_scores_gemma":[0.0002004837,0.0002059603,0.0008564713,0.001534545,0.0002378098,0.0003292092,0.0003704449,0.000383436,0.0003850794],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003070878,"about_ca_system_score_gemma":0.0003934807,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002295413,"about_ca_topic_score_gemma":0.00203963,"domain_scores_codex":[0.9997777,0.00001589033,0.00001562341,0.00008549529,0.00005872223,0.00004651318],"domain_scores_gemma":[0.9998801,0.00002238544,0.00003954573,0.0000127428,0.00002379598,0.00002138706],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002111368,0.0000201502,0.004294472,0.0001494162,0.00004338201,0.0001807218,0.00006323288,0.0001279871,0.9913722,0.00004045021,0.00009724512,0.003399511],"study_design_scores_gemma":[0.00003375446,0.0003982812,0.4990795,0.00006305856,0.0004218324,0.001715141,0.00118428,0.005322072,0.4811234,0.0004106662,0.01016385,0.00008420572],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9779392,0.001625136,0.003390136,0.0001396642,0.00001861967,0.00004153102,0.01541498,0.0002337813,0.001196863],"genre_scores_gemma":[0.9572636,0.001580643,0.009165528,0.0002162211,0.00002041808,0.0001339088,0.02931632,0.0001289636,0.00217438],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002295413,"threshold_uncertainty_score":0.004564166,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02837750448431817,"score_gpt":0.2501098519670541,"score_spread":0.2217323474827359,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}