{"id":"W4404414223","doi":"10.1111/mmi.15329","title":"Comparative Multi‐Omics Survey Reveals Novel Specialized Metabolites and Biosynthetic Gene Clusters Under <scp>GacS</scp> Control in <i>Pseudomonas donghuensis</i> Strain <scp>SVBP6</scp>","year":2024,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Fondo para la Investigación Científica y Tecnológica; Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Universidad Nacional de Quilmes; Consejo Nacional de Investigaciones Científicas y Técnicas; Deutsche Forschungsgemeinschaft","keywords":"Biology; In silico; Gene; Transcriptome; Mutant; Genome; Metabolomics; Proteomics; Pseudomonas; Function (biology); Metabolite; Computational biology; Extracellular; Biochemistry; Bacteria; Genetics; Gene expression; Bioinformatics","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007940132,0.000438576,0.0008094669,0.0001122517,0.0001769849,0.0002065691,0.0003602557,0.0003453872,0.00002334193],"category_scores_gemma":[0.0002843566,0.0002288137,0.0002007218,0.000491804,0.0003434492,0.0001297683,0.0001699382,0.0004946138,0.00005998869],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007396652,"about_ca_system_score_gemma":0.00003313327,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001048069,"about_ca_topic_score_gemma":0.002358458,"domain_scores_codex":[0.9969553,0.0009547633,0.000602153,0.0007360331,0.00007362832,0.0006780579],"domain_scores_gemma":[0.9971887,0.002241154,0.0001628329,0.0001522857,0.0001241011,0.0001309019],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001684547,0.0001861996,0.000798761,0.00001117554,0.0001824246,0.00003624902,0.0002231717,0.00006338465,0.997222,0.0001193045,0.0008999967,0.0002404571],"study_design_scores_gemma":[0.002770653,0.0003807078,0.09277572,0.0001689405,0.0002109593,0.001109516,0.001957613,0.001430146,0.8221771,0.0003121404,0.07628361,0.0004228777],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9888104,0.004399654,0.0007970228,0.00028584,0.000450293,0.0005671073,0.004488415,0.0000736275,0.0001276745],"genre_scores_gemma":[0.9960129,0.000287873,0.0005690398,0.001355749,0.00006857565,0.00002359991,0.001350881,0.000007426619,0.0003239501],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1750449,"threshold_uncertainty_score":0.9330751,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02837750448431817,"score_gpt":0.2501098519670541,"score_spread":0.2217323474827359,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}