{"id":"W4404486680","doi":"10.3390/genes15111480","title":"Nucleotide and Amino Acid Analyses of Unique Infectious Bronchitis Virus (IBV) Variants from Canadian Poultry Flocks with Drop in Egg Production","year":2024,"lang":"en","type":"article","venue":"Genes","topic":"Animal Virus Infections Studies","field":"Agricultural and Biological Sciences","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"Egg Farmers of Canada; Agriculture and Agri-Food Canada; Canadian Poultry Research Council","keywords":"Flock; Infectious bronchitis virus; Avian infectious bronchitis virus; Virology; Biology; Avian infectious bronchitis; Virus; Coronavirus disease 2019 (COVID-19); Medicine; Infectious disease (medical specialty)","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007132714,0.0001148,0.0001534785,0.00005511842,0.0001462591,0.00004283314,0.00005519014,0.00006018194,0.00009763215],"category_scores_gemma":[0.00003320499,0.0000486034,0.00002736438,0.0004793025,0.00009071165,0.0001109472,0.00003064178,0.00008718375,0.000009590572],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004568932,"about_ca_system_score_gemma":0.00002756528,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.4909701,"about_ca_topic_score_gemma":0.7864242,"domain_scores_codex":[0.9992811,0.00004946625,0.0001406993,0.0002811106,0.00007773824,0.0001698628],"domain_scores_gemma":[0.9997776,0.00004650346,0.00003130953,0.00004251307,0.00004254377,0.00005956726],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00001215104,0.00002466553,0.3387217,0.00001080424,0.00006545217,0.00001674133,0.00018689,0.00002986543,0.6239793,0.00005045118,0.0001308158,0.03677109],"study_design_scores_gemma":[0.00005148484,0.0002143299,0.9544339,0.00006703781,0.00004092686,0.00002160647,0.0007995438,0.00003933581,0.04180111,0.0003473837,0.002026253,0.0001571321],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9965901,0.001908592,0.000008447281,0.0003053042,0.0001366851,0.0001274755,0.00007778384,0.00005323469,0.0007923235],"genre_scores_gemma":[0.9989881,0.0006174341,0.00007736128,0.00003828901,0.0001687925,0.00001397824,0.00001653377,0.000001604864,0.00007794379],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6157121,"threshold_uncertainty_score":0.5124196,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02234132581542748,"score_gpt":0.2453956746775002,"score_spread":0.2230543488620727,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}