{"id":"W4404513083","doi":"10.1101/2024.11.18.623787","title":"<i>In silico</i> analysis of the evolution of root phenotypes during maize domestication in Neolithic soils of Tehuacán","year":2024,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Image Processing and 3D Reconstruction","field":"Computer Science","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"","keywords":"Domestication; In silico; Biology; Phenotype; Biotechnology; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000254408,0.0003788695,0.0002660192,0.0003839691,0.0005550832,0.0005775708,0.0006300918,0.0003046336,0.001408058],"category_scores_gemma":[0.0003433895,0.0001954725,0.0004100146,0.0006016779,0.0002501851,0.0001187062,0.0002142786,0.0002831382,0.0002013832],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001150104,"about_ca_system_score_gemma":0.0006539554,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.05426335,"about_ca_topic_score_gemma":0.05822376,"domain_scores_codex":[0.99992,0.00001198524,0.000003477448,0.00003514617,0.00000985343,0.00001946644],"domain_scores_gemma":[0.9999062,0.00003973522,0.00001612974,0.000008257866,0.00001762917,0.00001203719],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.001172944,0.0002361696,0.2527767,0.0004005994,0.0006480864,0.0007735613,0.001007559,0.3044702,0.4018789,0.003365095,0.001454128,0.03181601],"study_design_scores_gemma":[0.00008751137,0.0001523355,0.4225064,0.00002791821,0.0003502253,0.0002530374,0.0008123819,0.5107085,0.05672349,0.00112781,0.007178095,0.00007244604],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.99598,0.00003747483,0.002000915,0.00002707675,0.000002766215,0.000005542704,0.001189692,0.00008402402,0.0006725063],"genre_scores_gemma":[0.9921505,0.00005889193,0.004371071,0.00001957696,0.000001665211,0.00001800235,0.002837124,0.00004931175,0.0004938185],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.05426335,"threshold_uncertainty_score":0.107895,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005491539742844242,"score_gpt":0.2092792426194862,"score_spread":0.2037877028766419,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}