{"id":"W4404666915","doi":"10.1111/nph.20293","title":"Patterns of presence–absence variation of <scp>NLRs</scp> across populations of <i>Solanum chilense</i> are clade‐dependent and mainly shaped by past demographic history","year":2024,"lang":"en","type":"article","venue":"New Phytologist","topic":"Plant Pathogenic Bacteria Studies","field":"Agricultural and Biological Sciences","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"University of California, Davis; H2020 Marie Skłodowska-Curie Actions; Technische Universität München; Deutsche Forschungsgemeinschaft; Deutscher Akademischer Austauschdienst; European Commission","keywords":"Biology; Outcrossing; Nucleotide diversity; Clade; Population; Balancing selection; Evolutionary biology; Genetic variation; Single-nucleotide polymorphism; Genetics; Demographic history; Genome; Gene; Allele; Ecology; Phylogenetics; Haplotype; Genotype; Pollen","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001602174,0.0001635727,0.0003396059,0.00002121312,0.00007313759,0.00001690347,0.0002194577,0.0001309823,0.0000197689],"category_scores_gemma":[0.0001248534,0.00008049294,0.00009794704,0.0001988164,0.0001783889,0.0001223893,0.0001185094,0.0001239903,0.000001394739],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002519485,"about_ca_system_score_gemma":0.00001582457,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009896292,"about_ca_topic_score_gemma":0.002391008,"domain_scores_codex":[0.998692,0.00008144056,0.0004124758,0.0003447327,0.0002274784,0.0002418399],"domain_scores_gemma":[0.9990531,0.0003982599,0.0003314223,0.00008800856,0.00006519213,0.00006400899],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000009243756,0.000061628,0.3065642,0.00009058088,0.00003568497,0.000003957246,0.0004249341,0.00000183595,0.6893627,0.0001610075,0.002227425,0.001056808],"study_design_scores_gemma":[0.0001197498,0.0001338325,0.9939188,0.0001373716,0.00003319593,0.00001458773,0.0004402386,0.00005909496,0.00302226,0.0002395946,0.001810039,0.00007120285],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9939435,0.00277801,0.00006564921,0.0003197431,0.0003519985,0.0001914555,0.002212404,0.00004549962,0.00009172117],"genre_scores_gemma":[0.9990272,0.0003826392,0.00008898014,0.00003194345,0.00009618204,0.00001102252,0.0001479579,0.000001712495,0.0002123863],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6873546,"threshold_uncertainty_score":0.3282407,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02891001454320059,"score_gpt":0.2342328103509227,"score_spread":0.2053227958077222,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}