{"id":"W4404673143","doi":"10.1080/00275514.2024.2418792","title":"Genome sequencing, phylogenomics, and population analyses of <i>Tilletia</i> , with recognition of one common bunt species, <i>T. caries</i> (synonym <i>T. laevis</i> ), distinct from dwarf bunt, <i>T. controversa</i>","year":2024,"lang":"en","type":"article","venue":"Mycologia","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Food Inspection Agency; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada","keywords":"Biology; Phylogenomics; Genetics; Population; Synonym (taxonomy); Genome; Evolutionary biology; Phylogenetics; Zoology; Clade; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002259061,0.0003163691,0.0006134532,0.00008613795,0.00009831809,0.00004330871,0.0001839763,0.0002023638,0.00003533786],"category_scores_gemma":[0.00005653361,0.0002773789,0.0001332021,0.0001843224,0.0003270308,0.000004632937,0.0001902107,0.0001382685,0.000002475382],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005950077,"about_ca_system_score_gemma":0.000111234,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002473417,"about_ca_topic_score_gemma":0.0009882735,"domain_scores_codex":[0.9982858,0.00009872243,0.0005529104,0.0005865735,0.0001853179,0.0002906599],"domain_scores_gemma":[0.9989538,0.0001250313,0.0002939746,0.0003830276,0.0001638644,0.0000803111],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000281997,0.00006358179,0.02232917,0.0001285723,0.0005269942,0.000007538656,0.000134696,0.0001642241,0.9752674,0.00006199063,0.0002078482,0.0008259697],"study_design_scores_gemma":[0.00183488,0.00212792,0.2407287,0.0001995085,0.001132438,0.00002852766,0.0004488468,0.0001600501,0.7284875,0.0009307654,0.02302878,0.0008921243],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9846594,0.01137378,0.0005560528,0.00007462692,0.0001703407,0.0003849826,0.001705988,0.00001471991,0.001060133],"genre_scores_gemma":[0.994894,0.001944864,0.00153939,0.0001906229,0.0002319775,0.00002472494,0.00104147,0.0000406342,0.00009235024],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2467799,"threshold_uncertainty_score":0.9999678,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02864039457748715,"score_gpt":0.2466068524944059,"score_spread":0.2179664579169188,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}