{"id":"W4404673143","doi":"10.1080/00275514.2024.2418792","title":"Genome sequencing, phylogenomics, and population analyses of <i>Tilletia</i> , with recognition of one common bunt species, <i>T. caries</i> (synonym <i>T. laevis</i> ), distinct from dwarf bunt, <i>T. controversa</i>","year":2024,"lang":"en","type":"article","venue":"Mycologia","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Food Inspection Agency; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada","keywords":"Biology; Phylogenomics; Genetics; Population; Synonym (taxonomy); Genome; Evolutionary biology; Phylogenetics; Zoology; Clade; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003866302,0.0005783993,0.0003469118,0.001521872,0.0006110295,0.0008062745,0.0003153452,0.0005188977,0.0007565951],"category_scores_gemma":[0.000752797,0.0001918133,0.000920561,0.001633967,0.0002115347,0.0005125605,0.0005817611,0.0006898255,0.0003890318],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005168698,"about_ca_system_score_gemma":0.0006283176,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003557213,"about_ca_topic_score_gemma":0.006576335,"domain_scores_codex":[0.999726,0.00002464044,0.00002349223,0.0001219551,0.00005811202,0.00004572802],"domain_scores_gemma":[0.9996146,0.00009384599,0.000107952,0.00004254991,0.00007810407,0.00006298083],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003956248,0.0001380927,0.05312939,0.0004671248,0.0003433696,0.0004780662,0.00113042,0.001972305,0.9079176,0.0006229524,0.0004065846,0.03299857],"study_design_scores_gemma":[0.00006098028,0.0006834136,0.8647818,0.0001506521,0.0007545252,0.001688811,0.001535295,0.008609063,0.08645784,0.001004759,0.03416703,0.000105839],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.981118,0.001520171,0.007519734,0.0001158618,0.00002469914,0.00005554889,0.007881527,0.0001546068,0.00160978],"genre_scores_gemma":[0.9231026,0.001676511,0.02534825,0.0001435007,0.000036345,0.000116329,0.04796947,0.0001544522,0.001452592],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003557213,"threshold_uncertainty_score":0.007072985,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02864039457748715,"score_gpt":0.2466068524944059,"score_spread":0.2179664579169188,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}