{"id":"W4404688717","doi":"10.1371/journal.ppat.1012740","title":"Examining the molecular clock hypothesis for the contemporary evolution of the rabies virus","year":2024,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"Rabies epidemiology and control","field":"Immunology and Microbiology","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"Engineering and Physical Sciences Research Council; University of Glasgow; Medical Research Council; National Institute for Health and Care Research; Wellcome Trust","keywords":"Rabies virus; Rabies; Virology; Biology; Viral evolution; Lyssavirus; Molecular clock; Evolutionary biology; Rhabdoviridae; Genetics; Genome; Phylogenetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006626077,0.0001508152,0.0002513143,0.00003313486,0.0004045762,0.00001079351,0.0004369426,0.0002022973,0.00004926493],"category_scores_gemma":[0.0009448789,0.00006664666,0.0002521828,0.0001290007,0.0005283276,0.00003685317,0.00008574851,0.0002858344,0.00005864449],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002745381,"about_ca_system_score_gemma":0.0001016184,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004112034,"about_ca_topic_score_gemma":0.00001347037,"domain_scores_codex":[0.9985349,0.000631423,0.0003124435,0.0002370476,0.00003623275,0.0002480074],"domain_scores_gemma":[0.9954817,0.003837491,0.0001153716,0.00050265,0.00005490282,0.000007895163],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001001974,0.00003737844,0.002161225,0.00003910839,0.0008975943,0.000002930922,0.0005983403,0.00005245493,0.9588584,0.03038385,0.003198249,0.003670221],"study_design_scores_gemma":[0.002635845,0.0007965722,0.0828596,0.0006979747,0.002786883,0.0001620655,0.006521897,0.003201965,0.6549991,0.0289025,0.2155634,0.000872146],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7764093,0.2066454,0.004742493,0.006908753,0.001711288,0.001478819,0.0003761712,0.0001257539,0.001602091],"genre_scores_gemma":[0.9981128,0.0001264771,0.00002802661,0.0004685707,0.00005367718,0.0002646247,0.000006412945,0.00001916573,0.0009202751],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3038593,"threshold_uncertainty_score":0.3111714,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05171944168021027,"score_gpt":0.23636245830196,"score_spread":0.1846430166217497,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}