{"id":"W4404688717","doi":"10.1371/journal.ppat.1012740","title":"Examining the molecular clock hypothesis for the contemporary evolution of the rabies virus","year":2024,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"Rabies epidemiology and control","field":"Immunology and Microbiology","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"Engineering and Physical Sciences Research Council; University of Glasgow; Medical Research Council; National Institute for Health and Care Research; Wellcome Trust","keywords":"Rabies virus; Rabies; Virology; Biology; Viral evolution; Lyssavirus; Molecular clock; Evolutionary biology; Rhabdoviridae; Genetics; Genome; Phylogenetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00586652,0.0003650857,0.0005150528,0.0009825451,0.0006543274,0.001820101,0.001001492,0.0007520789,0.00147094],"category_scores_gemma":[0.02439046,0.0003093722,0.000663791,0.001190611,0.001072135,0.002222436,0.0007999006,0.001297039,0.0002710352],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001181591,"about_ca_system_score_gemma":0.0007590482,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.009868182,"about_ca_topic_score_gemma":0.005054653,"domain_scores_codex":[0.9985934,0.0007812335,0.00006552594,0.0003455141,0.000110528,0.0001039464],"domain_scores_gemma":[0.9900294,0.006662392,0.001894188,0.0006503829,0.0005085012,0.0002551185],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0007332098,0.00009456663,0.5439566,0.0005822584,0.001017065,0.0003989732,0.001590082,0.2988766,0.01431195,0.07917848,0.003797682,0.05546246],"study_design_scores_gemma":[0.000101131,0.0001907032,0.1588935,0.0001813122,0.0002443675,0.0003101531,0.001249879,0.7590419,0.003174052,0.07072509,0.005783077,0.0001048217],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9302441,0.001226278,0.06396208,0.001285571,0.00006600696,0.00002818912,0.0009465161,0.0001551147,0.002086094],"genre_scores_gemma":[0.9911237,0.0002750305,0.007718016,0.000147723,0.00002291491,0.00002016534,0.0005007436,0.00004104425,0.0001507862],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.009868182,"threshold_uncertainty_score":0.03102547,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05171944168021027,"score_gpt":0.23636245830196,"score_spread":0.1846430166217497,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}