{"id":"W4404716635","doi":"10.1093/gigascience/giae084","title":"Construction and analysis of telomere-to-telomere genomes for 2 sweet oranges: Longhuihong and Newhall (<i>Citrus sinensis</i>)","year":2024,"lang":"en","type":"article","venue":"GigaScience","topic":"Telomeres, Telomerase, and Senescence","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Ministry of Agriculture - Saskatchewan","keywords":"Genome; Orange (colour); Citrus × sinensis; Biology; Germplasm; Genomics; Reference genome; Telomere; Genetics; Biotechnology; Gene; Botany; Horticulture","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004144627,0.0005603792,0.000452911,0.0009357476,0.0005746254,0.0004771822,0.0004050259,0.0003851966,0.0009820247],"category_scores_gemma":[0.0004890127,0.0002798479,0.0008404051,0.001099365,0.0001482108,0.0003325405,0.0005276426,0.0005595848,0.0004129613],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005140153,"about_ca_system_score_gemma":0.0007468815,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003831657,"about_ca_topic_score_gemma":0.008925405,"domain_scores_codex":[0.9997635,0.00001194589,0.00002139544,0.0001188442,0.00005670793,0.00002753319],"domain_scores_gemma":[0.9997204,0.00004142992,0.000083794,0.00003220727,0.00007247632,0.0000497335],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004852284,0.00007542213,0.01526713,0.0006380239,0.0001051625,0.0003232304,0.0009231071,0.001234715,0.9532045,0.0004868514,0.0007029665,0.02655384],"study_design_scores_gemma":[0.000204986,0.0008897378,0.4604515,0.0003419657,0.0009529757,0.001769802,0.001383409,0.01947076,0.3938577,0.0006917311,0.119746,0.0002394529],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9519681,0.001081202,0.01722576,0.0001144141,0.00007418835,0.0002410744,0.02650705,0.0005869453,0.002201253],"genre_scores_gemma":[0.7018927,0.001141501,0.1099263,0.0001918103,0.00003051446,0.0004679996,0.1818178,0.0006934384,0.003837858],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003831657,"threshold_uncertainty_score":0.007618725,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01700226725038248,"score_gpt":0.2847449564585429,"score_spread":0.2677426892081605,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}