{"id":"W4404716635","doi":"10.1093/gigascience/giae084","title":"Construction and analysis of telomere-to-telomere genomes for 2 sweet oranges: Longhuihong and Newhall (<i>Citrus sinensis</i>)","year":2024,"lang":"en","type":"article","venue":"GigaScience","topic":"Telomeres, Telomerase, and Senescence","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Ministry of Agriculture - Saskatchewan","keywords":"Genome; Orange (colour); Citrus × sinensis; Biology; Germplasm; Genomics; Reference genome; Telomere; Genetics; Biotechnology; Gene; Botany; Horticulture","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003989056,0.0002383707,0.0006234307,0.0009833291,0.0001489144,0.0001123215,0.0001371734,0.00009581917,0.00004235439],"category_scores_gemma":[0.0001947348,0.0002005159,0.0001404402,0.002619773,0.000626702,0.0002416699,0.00008125404,0.0001261443,0.000005429058],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004523918,"about_ca_system_score_gemma":0.0001632541,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001065755,"about_ca_topic_score_gemma":0.00009117896,"domain_scores_codex":[0.9980252,0.00002626763,0.0004060496,0.0007536925,0.0003849161,0.0004038083],"domain_scores_gemma":[0.9987944,0.0002470969,0.00008389364,0.000339159,0.0001925611,0.0003428544],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"observational","study_design_scores_codex":[0.0003379246,0.0001241486,0.179689,0.001640034,0.001097382,0.0001154671,0.005556889,0.00009108146,0.2214603,0.005697697,0.000680469,0.5835096],"study_design_scores_gemma":[0.00282403,0.00205048,0.856423,0.001325344,0.007075999,0.0009191737,0.006202062,0.02874039,0.05613823,0.001730902,0.03486053,0.00170991],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9872935,0.00662208,0.003484041,0.00128269,0.000289798,0.0005230301,0.0001053572,0.0001022543,0.0002971877],"genre_scores_gemma":[0.9837476,0.000923619,0.01450247,0.0003961124,0.00009427061,0.00002406767,0.0000182966,0.0000216579,0.0002719232],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.676734,"threshold_uncertainty_score":0.8176801,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01700226725038248,"score_gpt":0.2847449564585429,"score_spread":0.2677426892081605,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}