{"id":"W4404766329","doi":"10.3390/genes15121519","title":"Comparative Evolutionary Genomics Reveals Genetic Diversity and Differentiation in Bacteroides fragilis","year":2024,"lang":"en","type":"article","venue":"Genes","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institute of Genetics; Japan Society for the Promotion of Science","keywords":"Biology; Bacteroides fragilis; Genome; Genetics; Gene; Comparative genomics; Genetic diversity; Genomics; Evolutionary biology; Population; Bacteria","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000712661,0.0000740707,0.00008388889,0.00004316481,0.0001314435,0.00003845923,0.0000620664,0.0000607166,0.00001995669],"category_scores_gemma":[0.0000205256,0.00007651617,0.00002614569,0.00005576877,0.00003804853,0.000006486641,0.0002333949,0.00003812501,0.00000712263],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002217562,"about_ca_system_score_gemma":0.00001807172,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000506829,"about_ca_topic_score_gemma":0.0001135466,"domain_scores_codex":[0.9994226,0.00005561621,0.0001310789,0.000255073,0.0000443429,0.00009135929],"domain_scores_gemma":[0.9997827,0.00001512147,0.00002246487,0.0001169066,0.00003188068,0.00003093588],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00001224573,0.00001746553,0.2070154,0.00003278886,0.00001646377,0.000001159277,0.0005107754,0.00001710382,0.7901407,0.00002939409,0.0002540794,0.001952495],"study_design_scores_gemma":[0.00009741516,0.00002678418,0.9847319,0.00001442422,0.00001043814,0.000005478425,0.0001065605,0.0009546402,0.01192716,0.000347942,0.001675012,0.0001022211],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9965166,0.002702387,0.0003549023,0.00006771879,0.0001729114,0.0001058812,0.00001913515,0.00001505204,0.00004534511],"genre_scores_gemma":[0.998571,0.0003240943,0.0006271811,0.0000358448,0.0001061497,0.000005939486,0.00009699547,0.000005283528,0.000227541],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7782135,"threshold_uncertainty_score":0.3120239,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0272802099750164,"score_gpt":0.2578771162880721,"score_spread":0.2305969063130557,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}