{"id":"W4404766329","doi":"10.3390/genes15121519","title":"Comparative Evolutionary Genomics Reveals Genetic Diversity and Differentiation in Bacteroides fragilis","year":2024,"lang":"en","type":"article","venue":"Genes","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institute of Genetics; Japan Society for the Promotion of Science","keywords":"Biology; Bacteroides fragilis; Genome; Genetics; Gene; Comparative genomics; Genetic diversity; Genomics; Evolutionary biology; Population; Bacteria","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003095584,0.0002614674,0.0002756755,0.002044825,0.0004418422,0.0004051651,0.0002104616,0.0004041101,0.0009526564],"category_scores_gemma":[0.0005491101,0.0001276424,0.0003354392,0.001450453,0.0002079731,0.0002511054,0.0003955956,0.0002848852,0.0001934076],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000366806,"about_ca_system_score_gemma":0.0002194985,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001538847,"about_ca_topic_score_gemma":0.001632041,"domain_scores_codex":[0.9997855,0.0000340411,0.00001291579,0.00007982051,0.00003523191,0.00005254268],"domain_scores_gemma":[0.9996966,0.00007776057,0.000104339,0.0000187537,0.0000513405,0.00005117445],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0006579385,0.00009415886,0.09042899,0.0002837563,0.0001490146,0.0004082152,0.001017518,0.001080135,0.8794906,0.0004840765,0.0002342534,0.02567152],"study_design_scores_gemma":[0.0000156695,0.0003284859,0.9739736,0.00004124342,0.0001128143,0.001041562,0.0006953413,0.004208561,0.01566802,0.0005848111,0.003302266,0.00002753666],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9970652,0.0006013617,0.001174715,0.00003857557,0.000003843586,0.00000706786,0.0005065048,0.00002066807,0.0005820823],"genre_scores_gemma":[0.9967784,0.0001970343,0.001746649,0.00002774142,0.000006247808,0.00001341539,0.001034432,0.00000819211,0.0001879114],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002044825,"threshold_uncertainty_score":0.003186941,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0272802099750164,"score_gpt":0.2578771162880721,"score_spread":0.2305969063130557,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}