{"id":"W4404980973","doi":"10.1080/14737159.2024.2436396","title":"Diagnosis and management of invasive fungal diseases by next-generation sequencing: are we there yet?","year":2024,"lang":"en","type":"review","venue":"Expert Review of Molecular Diagnostics","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":15,"is_retracted":false,"has_abstract":true,"ca_institutions":"BC Centre for Disease Control; University of British Columbia","funders":"National Cancer Institute","keywords":"Metagenomics; DNA sequencing; Computational biology; Whole genome sequencing; Medical diagnosis; Biology; Medicine; Genome; Genetics; Pathology; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002352824,0.0005647149,0.002651693,0.00009937446,0.00003708848,0.00002620529,0.000210998,0.0002180832,0.00008006656],"category_scores_gemma":[0.001025484,0.0004078578,0.0008289054,0.0003727984,0.0001788644,0.00005672362,0.0001808652,0.0002693177,0.00001510069],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001759339,"about_ca_system_score_gemma":0.0003127957,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001190431,"about_ca_topic_score_gemma":0.000005337192,"domain_scores_codex":[0.9970904,0.0002431208,0.001154089,0.00066466,0.0005993147,0.0002484152],"domain_scores_gemma":[0.9977517,0.0004372886,0.0005948918,0.000811187,0.0002062426,0.0001987077],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"systematic_review","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000003741223,0.0001714276,0.0001206212,0.5722301,0.0006594557,0.0005751585,0.00002595222,4.703275e-8,0.00003166051,0.000182805,0.07537122,0.3506278],"study_design_scores_gemma":[0.0001069919,0.0001070609,0.00001414932,0.4915101,0.006084979,0.00001535178,0.00006481381,0.000001175847,0.0002440834,0.00001924076,0.5015748,0.000257303],"study_design_candidate":"systematic_review","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00006576866,0.9961691,0.00007345191,0.0003827609,0.0001897187,0.002537207,0.00044303,0.000025675,0.0001133078],"genre_scores_gemma":[0.0001720254,0.9974511,0.0004505391,0.000494791,0.00009806405,0.0006057091,0.0005570981,0.00008424061,0.00008642119],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.4262035,"threshold_uncertainty_score":0.9998373,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1004931749891723,"score_gpt":0.3698576346740712,"score_spread":0.2693644596848989,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}