{"id":"W4405000075","doi":"10.1002/jez.b.23282","title":"Domain‐Shuffling in the Evolution of Cyclostomes and Gnathostomes","year":2024,"lang":"en","type":"article","venue":"Journal of Experimental Zoology Part B Molecular and Developmental Evolution","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institute of Genetics; Japan Society for the Promotion of Science","keywords":"Vertebrate; Biology; Evolutionary biology; Ancestor; Shuffling; Most recent common ancestor; Deuterostome; Gene; Genetics; Genome","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003328118,0.000116527,0.0001607391,0.0001177535,0.00005826237,0.00001523592,0.0000803793,0.0000821615,0.000002378928],"category_scores_gemma":[0.00001732529,0.00008854633,0.00006000747,0.00009339173,0.0001723339,0.00000495315,0.00008634061,0.00008795856,5.662652e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006846774,"about_ca_system_score_gemma":0.00009548206,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001813879,"about_ca_topic_score_gemma":0.000008669378,"domain_scores_codex":[0.9991905,0.0000800059,0.0003182234,0.0001605629,0.0001171264,0.000133575],"domain_scores_gemma":[0.9997712,0.00002291541,0.00008336912,0.00005672641,0.00003267611,0.00003312852],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00008211064,0.00005260237,0.01551888,0.00001701861,0.00008548626,0.00002671147,0.001002794,0.000011477,0.9796562,0.003103112,0.0001071218,0.0003365134],"study_design_scores_gemma":[0.002751671,0.002443363,0.2221607,0.0002925554,0.0001173301,0.003670339,0.03771736,0.00009121021,0.7110948,0.008352163,0.01064069,0.0006678774],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9167194,0.08175069,0.0007708289,0.000112546,0.0001915086,0.00009181102,0.000003470778,0.000001029243,0.0003587021],"genre_scores_gemma":[0.9976841,0.0005004546,0.001666251,0.00006412957,0.00005453335,0.000007082239,0.000003333633,0.000007992158,0.00001208631],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2685614,"threshold_uncertainty_score":0.3610815,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007544898231810192,"score_gpt":0.24742907202672,"score_spread":0.2398841737949098,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}