{"id":"W4405070667","doi":"10.14745/ccdr.v50i12da03","title":"Mycobacterium tuberculosis pseudo-outbreak due to laboratory cross-contamination: A molecular epidemiology outbreak investigation","year":2024,"lang":"en","type":"article","venue":"Canada Communicable Disease Report","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institut National de Santé Publique du Québec; Ministère de la Santé et des Services Sociaux (Québec); Public Health Agency of Canada; Centre Hospitalier de l’Université de Montréal; Université de Montréal","funders":"","keywords":"Outbreak; Epidemiology; Contamination; Tuberculosis; Mycobacterium tuberculosis; Molecular epidemiology; Virology; Environmental health; Medicine; Biology; Genotype; Pathology; Ecology; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":true,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006946957,0.0005214536,0.0002450419,0.001213763,0.001184973,0.001178474,0.0005880595,0.0007524054,0.0008871686],"category_scores_gemma":[0.001961745,0.0003438767,0.0003364999,0.0007818103,0.0005493808,0.0005056539,0.001001926,0.0004802697,0.0001199489],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001677695,"about_ca_system_score_gemma":0.001555131,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.04437477,"about_ca_topic_score_gemma":0.02992933,"domain_scores_codex":[0.9993349,0.0001230343,0.00007871669,0.0001551095,0.0001348245,0.0001733677],"domain_scores_gemma":[0.9985042,0.0002648752,0.000494962,0.00008124339,0.000290685,0.0003641965],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001285619,0.000136673,0.956916,0.00009355159,0.00003884562,0.03082669,0.001688009,0.0001899591,0.004160609,0.0001185326,0.000347007,0.005355437],"study_design_scores_gemma":[0.00003166855,0.0006378185,0.9538349,0.0000625799,0.00006959045,0.03736006,0.002754899,0.00163822,0.001727807,0.00008821916,0.001763186,0.0000310597],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9986035,0.0001958427,0.0005059469,0.0001121642,0.000008614909,0.0001045649,0.0001147163,0.00001062734,0.000343995],"genre_scores_gemma":[0.998723,0.00018533,0.00062333,0.0001056735,0.00002194619,0.00001850269,0.000214263,0.000003766237,0.0001043039],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9556252,"threshold_uncertainty_score":0.08823293,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02518243088294739,"score_gpt":0.3301774108403475,"score_spread":0.3049949799574,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}