{"id":"W4405151349","doi":"10.1101/2024.12.05.24318563","title":"Human Organ Chips Reveal New Inflammatory Bowel Disease Drivers","year":2024,"lang":"en","type":"preprint","venue":"medRxiv","topic":"Lymphatic System and Diseases","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; McGill University Health Centre","funders":"","keywords":"Inflammatory bowel disease; Inflammation; Fibrosis; Mucus; Disease; Stroma; Medicine; Cystic fibrosis; Immunology; Cancer research; Pathology; Biology; Internal medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000232175,0.0004710551,0.000578593,0.0002667603,0.00009624234,0.00009673049,0.0003237259,0.0002542005,0.0007327227],"category_scores_gemma":[0.0002580145,0.0003974617,0.0004395286,0.0001256808,0.0001107667,0.00003607387,0.0007705161,0.0002090593,0.001173211],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002506694,"about_ca_system_score_gemma":0.002031856,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007981239,"about_ca_topic_score_gemma":0.00001140773,"domain_scores_codex":[0.9974636,0.00009576735,0.0005814394,0.000806835,0.0006751986,0.0003771923],"domain_scores_gemma":[0.9970878,0.00003560347,0.0001763169,0.001208382,0.00008607608,0.001405838],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001222345,0.0001924624,0.8794363,0.01095088,0.0005162485,0.00340323,0.001059653,0.00001764849,0.00111681,0.0009562618,0.1016673,0.0005610117],"study_design_scores_gemma":[0.001834161,0.00006363592,0.9761084,0.004598179,0.002297083,0.00003662705,0.0001923165,0.00006792918,0.0003102309,0.008319992,0.005476071,0.0006953384],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9827659,0.004455504,0.000009481554,0.001815305,0.001807958,0.0009528037,0.00006828993,0.00053154,0.007593249],"genre_scores_gemma":[0.9699437,0.00003383138,0.00007138387,0.0004869607,0.002454235,0.00006319283,0.000179731,0.0001135351,0.02665341],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0966722,"threshold_uncertainty_score":0.9998477,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02098587593711779,"score_gpt":0.2803725128284812,"score_spread":0.2593866368913634,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}