{"id":"W4405261997","doi":"10.3389/fmicb.2024.1505893","title":"Proteomic analysis of the Treponema pallidum subsp. pallidum SS14 strain: coverage and comparison with the Nichols strain proteome","year":2024,"lang":"en","type":"article","venue":"Frontiers in Microbiology","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Victoria","funders":"National Institute of Allergy and Infectious Diseases; Genome British Columbia; National Institutes of Health; Open Philanthropy Project; University of Washington","keywords":"Treponema; Strain (injury); Biology; Proteome; Microbiology; Virology; Genetics; Syphilis; Anatomy","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001438882,0.0003077167,0.0001943643,0.0005983975,0.0002402925,0.0002691795,0.0001912806,0.0002513782,0.0008338952],"category_scores_gemma":[0.0002607586,0.0001132409,0.0002548511,0.0004254443,0.0001145347,0.0001671759,0.0003156996,0.0001786562,0.0002137611],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002176652,"about_ca_system_score_gemma":0.000264474,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002144424,"about_ca_topic_score_gemma":0.003475579,"domain_scores_codex":[0.9998784,0.000009360788,0.00001110981,0.00003248774,0.00005072527,0.00001790318],"domain_scores_gemma":[0.9998924,0.00001382149,0.00003608603,0.000007298437,0.00003593105,0.00001455386],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001308122,0.00001849164,0.009503115,0.00009019232,0.00002044979,0.00008675472,0.00007734588,0.00007234064,0.9871486,0.00003410342,0.0001243098,0.002693525],"study_design_scores_gemma":[0.0000146221,0.0003858986,0.469327,0.00004934685,0.000101657,0.001354578,0.000622437,0.002519283,0.519971,0.0001151821,0.005514269,0.0000247827],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9964581,0.0002921254,0.000676606,0.00003739383,0.000006237776,0.00001659946,0.0018741,0.0000237884,0.0006150183],"genre_scores_gemma":[0.9855328,0.0005831199,0.006033122,0.00006282009,0.000008259281,0.00004164436,0.006505598,0.00003035172,0.00120234],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002144424,"threshold_uncertainty_score":0.004263818,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01307358616703942,"score_gpt":0.2599824513708759,"score_spread":0.2469088652038365,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}