{"id":"W4405281014","doi":"10.1371/journal.ppat.1012739","title":"Polyfunctionality and breadth of HIV-1 antibodies are associated with delayed disease progression","year":2024,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institute of Infection and Immunity; Nederlandse Organisatie voor Wetenschappelijk Onderzoek; Universiteit van Amsterdam; Amsterdam University Medical Centers; Medical Research Council; Rijksinstituut voor Volksgezondheid en Milieu; National Health and Medical Research Council; Bill and Melinda Gates Foundation","keywords":"Antibody; Immunology; Seroconversion; Neutralization; Disease; Medicine; Immune system; Antigen; Virology; Internal medicine","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008184343,0.0001077321,0.0001596289,0.00006213672,0.0001039632,0.00001276068,0.00003949913,0.00006334644,0.0001471287],"category_scores_gemma":[0.00007586915,0.00006888912,0.00004193815,0.00009996928,0.0001954678,0.00004550126,0.00003923357,0.0001085998,0.000122275],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002615627,"about_ca_system_score_gemma":0.00007997862,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000008606544,"about_ca_topic_score_gemma":0.00001780048,"domain_scores_codex":[0.9992906,0.0001153103,0.0001100586,0.0002211523,0.00006130877,0.0002015767],"domain_scores_gemma":[0.9996102,0.0001128788,0.00004046163,0.0001193557,0.00006967412,0.00004743322],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0009440679,0.001101632,0.8262286,0.0002089811,0.002158873,0.0004202416,0.000379826,0.000001304784,0.1614057,0.0002906934,0.002165718,0.004694435],"study_design_scores_gemma":[0.001095968,0.0004921635,0.9822257,0.0006071799,0.0003617459,0.00002321481,0.0001366899,0.00003556373,0.01364738,0.000112561,0.001093208,0.0001686495],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9866672,0.00935699,0.00002363218,0.000315269,0.00004644706,0.0002067126,0.003102858,0.00007972398,0.0002011595],"genre_scores_gemma":[0.9978663,0.000110838,0.00003101769,0.00001082246,0.000009486932,0.00003038823,0.0009658209,0.00001086784,0.0009644396],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1559971,"threshold_uncertainty_score":0.2809217,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01863722018770428,"score_gpt":0.2653624399394617,"score_spread":0.2467252197517575,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}