{"id":"W4405380331","doi":"10.21203/rs.3.rs-4951397/v1","title":"Inner membrane components of the plasmid pKM101 type IV secretion system TraE and TraD are DNA-binding proteins","year":2024,"lang":"en","type":"preprint","venue":"Research Square","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"ca_institutions":"Université de Montréal","funders":"","keywords":"Plasmid; DNA; Chemistry; Secretion; Molecular biology; Biology; Biochemistry","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002135071,0.0006675886,0.000486856,0.0004978853,0.0003326357,0.001055162,0.0003436627,0.000662473,0.004041608],"category_scores_gemma":[0.0006471364,0.0004240778,0.0004606263,0.0006854963,0.0003501731,0.0007200097,0.0004876802,0.001517529,0.004366895],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007754191,"about_ca_system_score_gemma":0.0005418233,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008288298,"about_ca_topic_score_gemma":0.0004297298,"domain_scores_codex":[0.9997305,0.00002718698,0.00001441944,0.00004832002,0.0001273632,0.000052154],"domain_scores_gemma":[0.9996612,0.00008254675,0.00007352432,0.00008231665,0.00003789295,0.00006253357],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001800811,0.00003181677,0.0004796192,0.00008864862,0.000009560219,0.00008001544,0.00004741246,0.0002061571,0.9902041,0.002705051,0.0004461643,0.005521242],"study_design_scores_gemma":[0.00002370368,0.00006811302,0.006812244,0.00001713853,0.00001595115,0.0004284924,0.00005809914,0.001855571,0.9780684,0.001807221,0.01082865,0.00001646956],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9293931,0.001741192,0.05137933,0.0008973615,0.0002133316,0.00007420458,0.005752243,0.001715849,0.008833328],"genre_scores_gemma":[0.9320797,0.0009519132,0.02388265,0.0001439609,0.00004475695,0.00003876842,0.01700496,0.0005601356,0.02529307],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004041608,"threshold_uncertainty_score":0.01352054,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05073019332351139,"score_gpt":0.3415010175164745,"score_spread":0.2907708241929631,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}