{"id":"W4405393663","doi":"10.1093/nar/gkae1200","title":"The phage protein paratox is a multifunctional metabolic regulator of <i>Streptococcus</i>","year":2024,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba","funders":"Natural Sciences and Engineering Research Council of Canada; University of Manitoba; Manitoba Medical Service Foundation","keywords":"Biology; Virulence; Streptococcus pyogenes; Quorum sensing; Prophage; Gene; Genetics; Transcription factor; Bacteriophage; Bacteria; Staphylococcus aureus; Escherichia coli","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009674559,0.0004063949,0.0002885767,0.0001675799,0.0002581966,0.000309942,0.000148531,0.0002885674,0.002224239],"category_scores_gemma":[0.0001028342,0.00008723339,0.0002118336,0.0001572642,0.0002067682,0.0001396842,0.0002957033,0.0003489705,0.0008215831],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000295701,"about_ca_system_score_gemma":0.0002130258,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006928711,"about_ca_topic_score_gemma":0.0006508023,"domain_scores_codex":[0.9998912,0.00001813064,0.000003820776,0.00002550127,0.00004278934,0.00001854381],"domain_scores_gemma":[0.9999599,0.000005543913,0.00001207378,0.000003031574,0.000005244628,0.00001416636],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002049137,0.00003322044,0.001663103,0.0001196839,0.000008779393,0.0002423721,0.00002469678,0.000205806,0.9875229,0.0004341769,0.0004437798,0.009096471],"study_design_scores_gemma":[0.00004039059,0.0007898042,0.04985009,0.00004189424,0.00003655213,0.002860965,0.0001357086,0.003199998,0.8952563,0.0005422489,0.0472238,0.00002239142],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9687967,0.01341773,0.007468481,0.0006343463,0.00009913888,0.0000488917,0.001031789,0.0005471675,0.00795586],"genre_scores_gemma":[0.9823843,0.00258971,0.004824007,0.0001516249,0.00003004119,0.00002701399,0.001382681,0.00003496757,0.008575574],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002224239,"threshold_uncertainty_score":0.007440805,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05560361522460525,"score_gpt":0.384715374020117,"score_spread":0.3291117587955117,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}