{"id":"W4405549153","doi":"10.7554/elife.101241.2.sa3","title":"eLife Assessment: Avian-specific Salmonella enterica Serovar Gallinarum transition to endemicity is accompanied by localized resistome and mobilome interaction","year":2024,"lang":"en","type":"peer-review","venue":"","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Iogen Corporation","funders":"","keywords":"Salmonella enterica; Resistome; Serotype; Salmonella; Microbiology; Biology; Antibiotics; Bacteria; Genetics; Antibiotic resistance; Integron","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.01057641,0.0007958391,0.0009091006,0.007247872,0.001632559,0.004874284,0.001764304,0.001211727,0.03544668],"category_scores_gemma":[0.05589874,0.000506125,0.0005980075,0.004651729,0.001002067,0.002211573,0.004000046,0.0008059676,0.01041154],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001079271,"about_ca_system_score_gemma":0.006636892,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.008167767,"about_ca_topic_score_gemma":0.01906409,"domain_scores_codex":[0.9914519,0.001841051,0.0009639976,0.001043452,0.003853788,0.0008457838],"domain_scores_gemma":[0.9617015,0.00855567,0.005238927,0.001585072,0.02128262,0.001636233],"domain_codex":null,"domain_gemma":"evaluation","domain_candidate":"evaluation","domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0009671669,0.00008891708,0.170227,0.008288766,0.0005964873,0.002507168,0.003174653,0.001530126,0.009325681,0.00672894,0.3991189,0.3974462],"study_design_scores_gemma":[0.0001381146,0.0001488254,0.1266545,0.003168382,0.0005539962,0.001067773,0.006219123,0.006358947,0.0118208,0.005108028,0.8386299,0.0001315478],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"empirical","genre_gemma":"other","genre_scores_codex":[0.3235956,0.03097223,0.08625948,0.07429653,0.01492696,0.005602639,0.1805401,0.01775458,0.2660519],"genre_scores_gemma":[0.6734707,0.01366524,0.1178325,0.004025943,0.00359231,0.002362207,0.05264812,0.00227545,0.1301276],"genre_candidate":"other","genre_consensus":null,"teacher_disagreement_score":0.9894236,"threshold_uncertainty_score":0.1185809,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04291655336206195,"score_gpt":0.3190355994024459,"score_spread":0.2761190460403839,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}