{"id":"W4405560238","doi":"10.3390/microorganisms12122624","title":"Genomic Diversity and Virulence Factors of Clostridium perfringens Isolated from Healthy and Necrotic Enteritis-Affected Broiler Chicken Farms in Quebec Province","year":2024,"lang":"en","type":"article","venue":"Microorganisms","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph; Université de Montréal","funders":"Mitacs; Ministère de l'Agriculture, des Pêcheries et de l'Alimentation","keywords":"Virulence; Clostridium perfringens; Biology; Microbiology; Flock; Enteritis; Pathogen; Plasmid; Genetic diversity; Gene; Genome; Prophage; Broiler; Genetics; Bacteria; Bacteriophage; Escherichia coli","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001669213,0.0003263094,0.0005725631,0.0003141844,0.000220267,0.0000855781,0.0001726979,0.0002218816,0.00019995],"category_scores_gemma":[0.00006553338,0.0003050098,0.0000825528,0.0004013604,0.0002760128,0.0001376037,0.0008125013,0.0005796539,0.00002217485],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003597977,"about_ca_system_score_gemma":0.0003569496,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.04275048,"about_ca_topic_score_gemma":0.006400408,"domain_scores_codex":[0.9979304,0.00009114962,0.0004373213,0.0007349706,0.0002934469,0.0005126891],"domain_scores_gemma":[0.9991274,0.0001424338,0.00006781538,0.0003145102,0.00006960706,0.0002781686],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003251397,0.0001758468,0.0891189,0.0005041343,0.00009145194,0.0002096673,0.00307737,6.34122e-7,0.9038308,0.00001169047,0.0000790464,0.002575362],"study_design_scores_gemma":[0.002120919,0.0009054141,0.4142984,0.000651854,0.0001475195,0.00008835603,0.0008677318,0.00037173,0.5796579,0.00002595339,0.000476979,0.0003872561],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9928949,0.005180413,0.00004690405,0.0005312558,0.0001628029,0.0007856794,0.0002555836,0.0001035507,0.00003892091],"genre_scores_gemma":[0.9981269,0.00113978,0.00009813521,0.00007797052,0.00007828362,0.00000559603,0.00009130874,0.00005247279,0.0003295055],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3251795,"threshold_uncertainty_score":0.9999402,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01562595243375747,"score_gpt":0.2496652559417582,"score_spread":0.2340393035080008,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}