{"id":"W4405560238","doi":"10.3390/microorganisms12122624","title":"Genomic Diversity and Virulence Factors of Clostridium perfringens Isolated from Healthy and Necrotic Enteritis-Affected Broiler Chicken Farms in Quebec Province","year":2024,"lang":"en","type":"article","venue":"Microorganisms","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph; Université de Montréal","funders":"Mitacs; Ministère de l'Agriculture, des Pêcheries et de l'Alimentation","keywords":"Virulence; Clostridium perfringens; Biology; Microbiology; Flock; Enteritis; Pathogen; Plasmid; Genetic diversity; Gene; Genome; Prophage; Broiler; Genetics; Bacteria; Bacteriophage; Escherichia coli","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001733862,0.0002895537,0.0002766003,0.001211612,0.0007771926,0.0005622173,0.0001986771,0.0002842931,0.0007930906],"category_scores_gemma":[0.0003620055,0.0001220215,0.000208611,0.001306935,0.0003450424,0.0001234159,0.0002458648,0.0002174984,0.0001040205],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002058587,"about_ca_system_score_gemma":0.001591893,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.5767986,"about_ca_topic_score_gemma":0.7099757,"domain_scores_codex":[0.9997826,0.00001110235,0.00001359111,0.00008194056,0.00004706353,0.00006367057],"domain_scores_gemma":[0.9996439,0.00004043508,0.00007230164,0.00001259329,0.0001346202,0.00009602594],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0006588594,0.000101061,0.7599423,0.000168911,0.0001662978,0.001099588,0.002225079,0.0005334947,0.2205986,0.00009352797,0.0005009518,0.01391127],"study_design_scores_gemma":[0.000002637188,0.00003900105,0.9978198,0.00001073784,0.00001650805,0.0001613753,0.0006324956,0.0001755488,0.00068127,0.000003632967,0.0004536891,0.00000347728],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9978673,0.0002027107,0.0001166812,0.00002274371,0.00000242329,0.00001380481,0.001435278,0.000003286886,0.0003357148],"genre_scores_gemma":[0.9961131,0.0002018484,0.0003011795,0.00004549919,0.000002488916,0.000008922318,0.002599843,0.000003185309,0.0007238255],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4232014,"threshold_uncertainty_score":0.8513874,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01562595243375747,"score_gpt":0.2496652559417582,"score_spread":0.2340393035080008,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}