{"id":"W4405562606","doi":"10.7554/elife.105737","title":"The IBEX knowledge-base a community resource enabling adoption and development of immunofluorescence imaging methods","year":2025,"lang":"en","type":"preprint","venue":"eLife","topic":"Cell Image Analysis Techniques","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"NHLBI Division of Intramural Research; National Institute of Arthritis and Musculoskeletal and Skin Diseases; National Institute of Diabetes and Digestive and Kidney Diseases; National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences; National Cancer Institute; NIH Office of the Director; National Heart, Lung, and Blood Institute; NIHR Cambridge Biomedical Research Centre; National Institute for Health Research Biomedical Research Centre at Moorfields Eye Hospital NHS Foundation Trust and UCL Institute of Ophthalmology; Wellcome Trust; Biotechnology and Biological Sciences Research Council; Department of Health and Social Care; Medical Research Council; Common Fund; Directorate for Biological Sciences; Conselho Nacional de Desenvolvimento Científico e Tecnológico; Instituto Politécnico Nacional; Institute of Infection and Immunity; Fundação de Amparo à Pesquisa do Estado de São Paulo; Bundesministerium für Bildung und Forschung; Institute of Circulatory and Respiratory Health; NHS Blood and Transplant; National Institute for Health and Care Research; Instituto Nacional de Ciência e Tecnologia de Doenças Tropicais; Canadian Institute for Advanced Research; Canadian Institutes of Health Research; Damon Runyon Cancer Research Foundation; European Research Council; Fundação de Amparo à Pesquisa do Estado de Minas Gerais; Canadian Allergy, Asthma and Immunology Foundation; Newcastle University; J.P. Bickell Foundation; National Institutes of Health; U.S. Department of Health and Human Services","keywords":"Pace; Knowledge base; Resource (disambiguation); Computer science; Software; Knowledge management; Data science; Service (business); World Wide Web; Base (topology); Business; Geography","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.02312476,0.00270765,0.002859763,0.01980131,0.003345087,0.01468581,0.00931157,0.005233712,0.05589144],"category_scores_gemma":[0.06924348,0.00218499,0.001751939,0.01222616,0.001548631,0.009935086,0.01451914,0.005546434,0.07793564],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.003007087,"about_ca_system_score_gemma":0.01402192,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004052969,"about_ca_topic_score_gemma":0.00539024,"domain_scores_codex":[0.9910301,0.001949289,0.001134793,0.001234076,0.003973682,0.0006781702],"domain_scores_gemma":[0.9450191,0.01700604,0.003382539,0.01611588,0.01232016,0.006156194],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0007816088,0.000567899,0.00209628,0.004866491,0.0002512717,0.001105141,0.001613294,0.002665222,0.01922235,0.03520327,0.5109645,0.4206627],"study_design_scores_gemma":[0.0001022392,0.00006042948,0.0008747439,0.00216782,0.000126867,0.0004659884,0.0002472869,0.003285717,0.0107742,0.02401552,0.9577374,0.0001416708],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"methods","genre_gemma":"software","genre_scores_codex":[0.007675905,0.01113131,0.5756148,0.007655012,0.001683847,0.002586292,0.1391942,0.1194986,0.13496],"genre_scores_gemma":[0.01991379,0.008928947,0.6175306,0.002650817,0.0005464763,0.003125919,0.2863678,0.02883358,0.032102],"genre_candidate":"software","genre_consensus":null,"teacher_disagreement_score":0.05589144,"threshold_uncertainty_score":0.1869755,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02318809143779703,"score_gpt":0.3512721675619416,"score_spread":0.3280840761241446,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}