{"id":"W4405571124","doi":"10.1128/mra.00677-24","title":"Draft genome sequences of <i>Pseudomonas chengduensis</i> strain BW1 and <i>Sphingobium</i> sp. strain MK2 isolated from oil sands process-affected water","year":2024,"lang":"en","type":"article","venue":"Microbiology Resource Announcements","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Petroleum Technology Development Fund; Federal Ministry of Petroleum Resources; Deutscher Akademischer Austauschdienst; University of Alberta","keywords":"Strain (injury); Genome; Phenanthrene; Pseudomonas; Biology; Microbiology; Bacteria; Gene; Genetics","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002968352,0.0003749082,0.0004052806,0.00007538069,0.0001436466,0.00005246795,0.0002844072,0.0003197322,0.00004553346],"category_scores_gemma":[0.00001500529,0.0002949633,0.0001114992,0.0001112041,0.0004154947,0.000003585845,0.0002473948,0.0001819481,0.00001365611],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001870005,"about_ca_system_score_gemma":0.00007094108,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005065292,"about_ca_topic_score_gemma":0.00003265146,"domain_scores_codex":[0.998045,0.0001180902,0.0004464419,0.0007933116,0.00008147513,0.0005157122],"domain_scores_gemma":[0.9993771,0.00002457852,0.00009698297,0.0003130971,0.000105889,0.00008235523],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001050174,0.00005894335,0.001018559,0.0001119267,0.0004977751,0.00001449119,0.001294032,0.0000481434,0.9957162,0.000003161792,0.0003592293,0.0007725884],"study_design_scores_gemma":[0.001788102,0.001166374,0.001032611,0.0001742769,0.0002543348,0.0001279275,0.001248609,0.00005023448,0.6723417,0.0001870671,0.3206659,0.0009628838],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.980557,0.0118291,0.00004903727,0.0002583779,0.0001462269,0.0001691322,0.006576107,0.000020492,0.0003945288],"genre_scores_gemma":[0.9910869,0.0006531782,0.0001808308,0.0004913752,0.0001926228,0.00002846336,0.006775297,0.00004208552,0.0005492747],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3233745,"threshold_uncertainty_score":0.9999502,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007222640396021142,"score_gpt":0.2213505438248196,"score_spread":0.2141279034287984,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}