{"id":"W4405645260","doi":"10.1101/2024.12.12.628160","title":"Persistent genomic erosion in whooping cranes despite demographic recovery","year":2024,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Molecular Biology Techniques and Applications","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"U.S. Geological Survey; U.S. Fish and Wildlife Service; Natural Environment Research Council; Sight Research UK","keywords":"Whooping cough; Erosion; Medicine; Biology; Virology; Paleontology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002416384,0.0001694557,0.0001986132,0.0008269164,0.0004686706,0.0006291236,0.0002827322,0.0003124409,0.0009352918],"category_scores_gemma":[0.0008175039,0.0001440902,0.0001517332,0.0009406995,0.0006029587,0.0002405046,0.0003507185,0.0004006172,0.0001572814],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005873534,"about_ca_system_score_gemma":0.0003316038,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.02356421,"about_ca_topic_score_gemma":0.05203583,"domain_scores_codex":[0.9998368,0.00001426558,0.000007711552,0.00006821592,0.00003558621,0.00003736053],"domain_scores_gemma":[0.9994466,0.00007130626,0.0002057933,0.00005969435,0.0001392511,0.00007736716],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002350662,0.00003153317,0.9299566,0.00009233259,0.000107274,0.0006251022,0.001489738,0.0009247139,0.04278661,0.0001855389,0.0004603458,0.02310516],"study_design_scores_gemma":[0.00000201178,0.00002779212,0.9973114,0.00001434386,0.00001726325,0.0002362256,0.0005123962,0.0002510898,0.0006899709,0.00005515696,0.0008772284,0.000005075115],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9987129,0.0001541717,0.0002212036,0.00004713645,0.000002531235,0.000003177921,0.0004312071,0.000008899485,0.0004187949],"genre_scores_gemma":[0.9983554,0.0001274856,0.0003552998,0.00004491163,0.000004282681,0.000007448969,0.0008316431,0.00000511925,0.0002683683],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02356421,"threshold_uncertainty_score":0.04685414,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009560829693722786,"score_gpt":0.2221726609512237,"score_spread":0.2126118312575009,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}