{"id":"W4405729856","doi":"10.1101/2024.12.18.629212","title":"Unveiling unique metabolomic and transcriptomic profiles in three Brassicaceae crops","year":2024,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Plant Ecology and Taxonomy Studies","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"","keywords":"Brassicaceae; Metabolomics; Transcriptome; Biology; Computational biology; Biotechnology; Botany; Genetics; Bioinformatics; Gene; Gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001122985,0.0004360878,0.0003061424,0.000695261,0.0002863398,0.0003856237,0.0001046168,0.0002577637,0.0006837421],"category_scores_gemma":[0.0001248881,0.0001565014,0.0003724363,0.0006167523,0.0001678751,0.0002253334,0.0002713527,0.0002943868,0.0002482675],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001844712,"about_ca_system_score_gemma":0.0001791542,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001668611,"about_ca_topic_score_gemma":0.002309532,"domain_scores_codex":[0.9999207,0.000006342853,0.000004611207,0.00003788873,0.00001370064,0.00001664742],"domain_scores_gemma":[0.9999226,0.00001621245,0.00001734851,0.00000831104,0.00001877187,0.00001672919],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001064864,0.000007251405,0.001492541,0.00003421663,0.000008621882,0.00004087161,0.00004064632,0.00003032857,0.9970566,0.00001390232,0.0000197847,0.001148705],"study_design_scores_gemma":[0.0000607336,0.0004198867,0.5374576,0.00003515987,0.000183901,0.0009288609,0.000840095,0.002547523,0.4492809,0.0004262654,0.007766576,0.00005247365],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9911301,0.001683794,0.002007943,0.00008761108,0.00001315748,0.00002377594,0.004453588,0.00005748415,0.0005426272],"genre_scores_gemma":[0.9778737,0.001236757,0.005785336,0.0001573302,0.00001864415,0.00007004233,0.01305045,0.00005391994,0.001753812],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001668611,"threshold_uncertainty_score":0.003317833,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01744675367949173,"score_gpt":0.1946669765975533,"score_spread":0.1772202229180616,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}