{"id":"W4405729856","doi":"10.1101/2024.12.18.629212","title":"Unveiling unique metabolomic and transcriptomic profiles in three Brassicaceae crops","year":2024,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Plant Ecology and Taxonomy Studies","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"","keywords":"Brassicaceae; Metabolomics; Transcriptome; Biology; Computational biology; Biotechnology; Botany; Genetics; Bioinformatics; Gene; Gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005495421,0.0004848154,0.0006581525,0.00008496595,0.0001917115,0.0001617779,0.0003732006,0.0005890775,0.00005682204],"category_scores_gemma":[0.00007451857,0.0002427479,0.0001259682,0.0003931472,0.0001977389,0.00008801051,0.0005184101,0.001035225,0.00005587039],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009253161,"about_ca_system_score_gemma":0.0001009772,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002053878,"about_ca_topic_score_gemma":0.001338647,"domain_scores_codex":[0.9977781,0.0001334369,0.000439322,0.0009923504,0.0001319762,0.0005247696],"domain_scores_gemma":[0.9992774,0.0001976694,0.0001549904,0.0001608803,0.00007603664,0.0001330846],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00005556052,0.000109228,0.0845364,0.0002696482,0.0002065926,0.0001134756,0.00001276598,0.000007848324,0.9126134,0.001804364,0.000242661,0.00002806787],"study_design_scores_gemma":[0.0002073506,0.00005919841,0.9376757,0.0003614462,0.0001232477,6.242488e-8,0.00001193419,0.000209995,0.05518254,0.0001248174,0.005326553,0.0007172287],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.988541,0.008074831,0.000006407409,0.001256482,0.0006662701,0.0007083923,0.0004340063,0.0002859055,0.00002669736],"genre_scores_gemma":[0.9980525,0.000856916,0.0003850686,0.0001405196,0.0002901578,0.0002589608,7.859709e-7,0.000007329264,0.000007798209],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8574309,"threshold_uncertainty_score":0.9898971,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01744675367949173,"score_gpt":0.1946669765975533,"score_spread":0.1772202229180616,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}