{"id":"W4405799397","doi":"10.1128/msphere.00825-24","title":"Dextran sodium sulfate-induced colitis alters the proportion and composition of replicating gut bacteria","year":2024,"lang":"en","type":"article","venue":"mSphere","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University Health Centre; McGill University","funders":"Faculty of Medicine and Health, University of Sydney; Fonds de recherche du Québec – Nature et technologies; Fonds de recherche du Québec; McGill University; Faculty of Medicine, McGill University; Kenneth Rainin Foundation; Canadian Institutes of Health Research; McGill University Health Centre; Canada Research Chairs","keywords":"Akkermansia; Akkermansia muciniphila; Colitis; Bacteria; Biology; Gut flora; Microbiology; Microbiome; Ex vivo; Immunology; In vivo; Lactobacillus; Bioinformatics; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001186642,0.00006697734,0.00007042273,0.000007404552,0.00006825969,0.00002731879,0.00005297625,0.00006745573,0.00002195613],"category_scores_gemma":[0.000005117352,0.00005059911,0.0000303428,0.00004042653,0.00004109301,0.000002889509,0.00002840625,0.00005752444,0.000003322437],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000009130386,"about_ca_system_score_gemma":0.00004796583,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007625132,"about_ca_topic_score_gemma":0.00006521415,"domain_scores_codex":[0.9994746,0.0000354519,0.0001490127,0.0001877132,0.00004059549,0.0001126629],"domain_scores_gemma":[0.9997213,0.000005363694,0.00004505973,0.000166225,0.00003251226,0.00002948194],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002677223,0.00001001342,0.0003271782,0.0001275958,0.00001510405,0.000001108538,0.0001415101,5.086611e-7,0.9939262,0.0001349454,0.0006816748,0.004607373],"study_design_scores_gemma":[0.0002365478,0.0002368428,0.05147537,0.0001147258,0.0000272865,0.00006946881,0.0002757702,0.00009519444,0.93848,0.00007234966,0.008789904,0.0001265984],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9979528,0.0005288614,0.0001502484,0.0006618263,0.00009506511,0.000190359,0.00001679416,0.00001231801,0.0003917005],"genre_scores_gemma":[0.999207,0.00009088709,0.0002604464,0.0001003033,0.00009171826,0.00001095296,0.00009799729,0.00001103113,0.0001297099],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.05544627,"threshold_uncertainty_score":0.2063372,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01171772093786924,"score_gpt":0.266856409463068,"score_spread":0.2551386885251988,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}