{"id":"W4405799397","doi":"10.1128/msphere.00825-24","title":"Dextran sodium sulfate-induced colitis alters the proportion and composition of replicating gut bacteria","year":2024,"lang":"en","type":"article","venue":"mSphere","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University Health Centre; McGill University","funders":"Faculty of Medicine and Health, University of Sydney; Fonds de recherche du Québec – Nature et technologies; Fonds de recherche du Québec; McGill University; Faculty of Medicine, McGill University; Kenneth Rainin Foundation; Canadian Institutes of Health Research; McGill University Health Centre; Canada Research Chairs","keywords":"Akkermansia; Akkermansia muciniphila; Colitis; Bacteria; Biology; Gut flora; Microbiology; Microbiome; Ex vivo; Immunology; In vivo; Lactobacillus; Bioinformatics; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001899643,0.0003358568,0.0003157417,0.0004492459,0.00008885839,0.0004367547,0.0001524783,0.0003399593,0.0009595361],"category_scores_gemma":[0.0001642125,0.0001993904,0.0002438196,0.0002469725,0.0002013302,0.0002409871,0.0001738398,0.0006886825,0.0002538956],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001873019,"about_ca_system_score_gemma":0.0001135365,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000393281,"about_ca_topic_score_gemma":0.0004538582,"domain_scores_codex":[0.9997948,0.00003235912,0.00001697916,0.00005507054,0.00005505716,0.00004579044],"domain_scores_gemma":[0.9996529,0.00004365968,0.0001365996,0.00003652693,0.00004527626,0.00008512388],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001337768,0.00002370325,0.0005595944,0.00001868147,0.000004352676,0.000006155098,0.000006117505,0.00001597513,0.9985878,0.000008533471,0.00001020246,0.0006250385],"study_design_scores_gemma":[0.00001331719,0.001257763,0.04519239,0.00001522488,0.00002957881,0.0001094171,0.00007943992,0.001245135,0.9510508,0.00004929565,0.0009478303,0.000009781471],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9946775,0.001111913,0.003039715,0.00007672304,0.00003709861,0.00002266469,0.0004737572,0.0001003374,0.000460138],"genre_scores_gemma":[0.9943178,0.000598408,0.003222138,0.00009228951,0.00001244266,0.00003178521,0.0004647303,0.00002673805,0.001233671],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0009595361,"threshold_uncertainty_score":0.003210008,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01171772093786924,"score_gpt":0.266856409463068,"score_spread":0.2551386885251988,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}