{"id":"W4405841210","doi":"10.1128/mra.01203-24","title":"Culture collection containing 1,240 isolates from healthy Canadian laying hens","year":2024,"lang":"en","type":"article","venue":"Microbiology Resource Announcements","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"Egg Farmers of Canada; Ministère de l'Agriculture, des Pêcheries et de l'Alimentation; McGill University","keywords":"Microbiome; Feces; Biology; Gut microbiome; Zoology; Microbiology; Bioinformatics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000204947,0.0002475618,0.0002205797,0.0001347916,0.0004340133,0.00007994926,0.00020228,0.0004139082,0.0001028964],"category_scores_gemma":[0.00002044418,0.0002343887,0.00009309329,0.0001933772,0.00008798315,0.000006238257,0.00008197599,0.0002819979,0.0001495257],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002479456,"about_ca_system_score_gemma":0.0005771307,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01478348,"about_ca_topic_score_gemma":0.01634874,"domain_scores_codex":[0.9982501,0.0001208415,0.0002944161,0.0006410254,0.00003468456,0.0006589451],"domain_scores_gemma":[0.9994003,0.00001437497,0.00005986111,0.0002606111,0.00006739906,0.0001975097],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001108709,0.00001551107,0.009187077,0.00002350207,0.0001151303,0.00001197776,0.0006356104,0.000009564208,0.8891513,0.00001227376,0.1004569,0.0002702374],"study_design_scores_gemma":[0.0004427265,0.0005303463,0.0002286063,0.00006587039,0.00002498755,0.00007198901,0.0009969637,0.00002469607,0.001888091,0.00001487825,0.9954607,0.0002500752],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9820206,0.009958642,0.0001968462,0.001470058,0.0008028226,0.0004194066,0.002466091,0.00007381318,0.00259173],"genre_scores_gemma":[0.9686923,0.0004831303,0.0003497106,0.007338594,0.0005756693,0.00003023472,0.01827679,0.0000511182,0.004202455],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8950039,"threshold_uncertainty_score":0.9917772,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0107346130653303,"score_gpt":0.2569742301773762,"score_spread":0.2462396171120459,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}